RetrogeneDB ID: | retro_dnov_995 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_13207:55979..56243(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSDNOG00000018469 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 85.87 % |
Parental protein coverage: | 98.89 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | PKRKAEGDVKGDKAKVKDEPQRRSARLSAK-PAPPKPEPKPK-KAPAKKGEKVPKGKKGKADAGKDGNNP |
PKRKAEGDV.G.KAKVKDEPQRRSAR.SA..PAPPKPE.KP..KA.AKKGEKVP.GK.GKA.AGKDGNNP | |
Retrocopy | PKRKAEGDV*GEKAKVKDEPQRRSAR*SAT<PAPPKPEAKPE<KAAAKKGEKVPTGKEGKAGAGKDGNNP |
Parental | AENGDAKTDQ-AQKAEGAGDAK |
AENGDAKTDQ.AQKAEGAGDAK | |
Retrocopy | AENGDAKTDQ<AQKAEGAGDAK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 171 .91 RPM |
SRP012922_cerebellum | 0 .00 RPM | 56 .64 RPM |
SRP012922_heart | 0 .00 RPM | 37 .82 RPM |
SRP012922_kidney | 0 .00 RPM | 69 .27 RPM |
SRP012922_liver | 0 .00 RPM | 25 .23 RPM |
SRP012922_lung | 0 .00 RPM | 112 .56 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 29 .94 RPM |
SRP012922_spleen | 0 .00 RPM | 232 .70 RPM |