RetrogeneDB ID: | retro_dord_126 | ||
Retrocopylocation | Organism: | Kangaroo rat (Dipodomys ordii) | |
Coordinates: | GeneScaffold_3716:291826..292726(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Smu1 | ||
Ensembl ID: | ENSDORG00000006011 | ||
Aliases: | None | ||
Description: | smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans) [Source:MGI Symbol;Acc:MGI:1915546] |
Percent Identity: | 86.67 % |
Parental protein coverage: | 69.7 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | AYPDGSSKEKRRAAIAQALAGEVSVVPPSRLMALLGQALKWQQHQGLLPPGMTIDLFRGKAAVKDVEEEK |
AYP.GSSKEKRRAAIAQALAGEVSVVPPSRL.ALLGQALKWQQHQGLLPPG.TIDLFRGKAAVKDVEEEK | |
Retrocopy | AYPEGSSKEKRRAAIAQALAGEVSVVPPSRLLALLGQALKWQQHQGLLPPGPTIDLFRGKAAVKDVEEEK |
Parental | FPTQLSRHIKFGQKSHVECARFSPDGQYLVTGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMMMDDAVLCM |
FPT.LSRHIKFGQKSHVECARFSPDGQYLVTGSVDGFIEVWNF.TGKIRKDLKYQAQDNFMMMDDAVLCM | |
Retrocopy | FPTRLSRHIKFGQKSHVECARFSPDGQYLVTGSVDGFIEVWNFMTGKIRKDLKYQAQDNFMMMDDAVLCM |
Parental | CFXXXXXXXXXXXXXXXXXVWKIQSGQCLRRFERAHSKGVTCLSFSKDSSQILSASFDQTIRIHGLKSGK |
CF.................VWKIQSGQCLRRFERAHSK.VT.LSFSKDSSQILSAS.DQTIRIHGLKSGK | |
Retrocopy | CFSRDTEMLATGAQDGKIKVWKIQSGQCLRRFERAHSKAVTSLSFSKDSSQILSASLDQTIRIHGLKSGK |
Parental | TLKEFRGHSSFVNEATFTQDGHYIISASSDGTVKXXXXXXXXXXXXFKSLGSTAGTDITVNSV-LLPKNP |
TLKEF.GHSSFVNEATFTQDGHYIISASSDGTVK.............KSLGSTAGTDITVNSV.LLPKNP | |
Retrocopy | TLKEFCGHSSFVNEATFTQDGHYIISASSDGTVKIWNTKTTECSNTLKSLGSTAGTDITVNSVILLPKNP |
Parental | EHFVVCNRSNTVVIMNMQGQ |
EHFVVCNRSNTVVIMNMQGQ | |
Retrocopy | EHFVVCNRSNTVVIMNMQGQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dipodomys ordii | ENSDORG00000006011 | 2 retrocopies |
retro_dord_126 , retro_dord_137,
|
Dipodomys ordii | ENSDORG00000015010 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000007953 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000016097 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000003439 | 1 retrocopy |