RetrogeneDB ID: | retro_ecab_1008 | ||
Retrocopy location | Organism: | Horse (Equus caballus) | |
| Coordinates: | 9:37973888..37974490(+) | ||
| Located in intron of: | ENSECAG00000026869 | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | MOB2 | ||
| Ensembl ID: | ENSECAG00000020591 | ||
| Aliases: | None | ||
| Description: | MOB kinase activator 2 [Source:HGNC Symbol;Acc:24904] |
Retrocopy-Parental alignment summary:
>retro_ecab_1008
GAAGGCCAAGCGAAGCCCAACGGGGAGAAGCCGGCCGCGGAGAAGATGTACCTAGGAGCTGGAGTACACCAAGTCCGGAA
TCACCGACTTCCAGGTCAAGGGACTGCTGGTGCTGCCCGGGGAGAATGACCTCCACGTGCGGCTGGCCAGCACATCACGA
CATTTTTCTGCAGGTCAACCTGCAGCATAGCACTGCCTCAGAATTCTGCACAGGAGAGGCGTGCCAGACGATGGCCGTGT
GTGACACACGGTACTACTGGTGAGAGCTGGGGAAGAAGGTCAAGTGCACACGCCCCAGTATGTCGACTTTGTCTTGAGCT
CAGCGCAGAACCGGGTGATCAACGAGGGCGTGTTCCACATGAAATAGGCAGTGAATTCTCCAGCTCCTTCGAGTCAATGG
TGAAGAAGATCTGCAAATACCTGTTCCCGATGCTAGGGTACGTCTGCTCGTCCCACTTCCAGGAAACCCTGGCCTTGGAG
CTGCACGCGCGCTTGAATACACTCTATGGCCAGTTCCTCTTCTCCACGAAGTTCAACCTGCTTGGTTCCAAAGAGACCCT
GGTCATGACCATTGCATCGAGGTGCTGTGCAGCGGCAGGGGT
ORF - retro_ecab_1008 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 66.51 % |
| Parental protein coverage: | 89.57 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 6 |
Retrocopy - Parental Gene Alignment:
| Parental | KSKAKPNGKKPAAEEKKMYL-EPEYTKSRITDFEFKELVVLPREIDLNEWLASNT-TTFFHH-VNLQYST |
| ...AKPNG.KPAAE..KMYL.E.EYTKS.ITDF..K.L.VLP.E.DL...LAS...TTFF...VNLQ.ST | |
| Retrocopy | EGQAKPNGEKPAAE--KMYL>ELEYTKSGITDFQVKGLLVLPGENDLHVRLASTS<TTFFCR<VNLQHST |
| Parental | ISEFCTGEACQTMAVCNTQYYWHDERGKKVKCT-APQYVDFVMSSVQKLVTDEDVF-PTKYGREFPSSFE |
| .SEFCTGEACQTMAVC.T.YYW..E.GKKVKCT..PQYVDFV.SS.Q..V..E.VF.P...G.EF.SSFE | |
| Retrocopy | ASEFCTGEACQTMAVCDTRYYW*-ELGKKVKCT<TPQYVDFVLSSAQNRVINEGVF<PHEIGSEFSSSFE |
| Parental | SLVKKICKYLFHVLAHIYSSHFKETLALELHGHLNTLYVHFILFAREFNLLDPKETAVM-DDLTEVLCSS |
| S.VKKICKYLF..L....SSHF.ETLALELH..LNTLY..F.LF...FNLL..KET.VM.D...EVLCS. | |
| Retrocopy | SMVKKICKYLFPMLGYVCSSHFQETLALELHARLNTLYGQF-LFSTKFNLLGSKETLVM<DHCIEVLCSG |
| Parental | GG |
| .G | |
| Retrocopy | RG |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP021940_articular_cartilage | 0 .00 RPM | 8 .21 RPM |
| SRP021940_cerebellum | 0 .00 RPM | 12 .00 RPM |
| SRP021940_embryo | 0 .08 RPM | 9 .16 RPM |
| SRP021940_placental_villous | 0 .10 RPM | 19 .77 RPM |
| SRP021940_synovial_membrane | 0 .03 RPM | 15 .15 RPM |
| SRP021940_testis | 0 .26 RPM | 26 .09 RPM |
Equus caballus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ecab_1008 retrocopy.
Equus caballus was not studied using FANTOM5 data.
retro_ecab_1008 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ecab_1008 has 0 orthologous retrocopies within eutheria group .Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Equus caballus | ENSECAG00000020591 | 1 retrocopy |
retro_ecab_1008 ,
|
| Myotis lucifugus | ENSMLUG00000006539 | 1 retrocopy |