>retro_eeur_356
GTGAGGATGATTCGCCGGGGACTGCTGTCGTGGGTCTCGAGGGTGGCAGTGCTGCTTGTTCTCCTTTGCTGTGTCATCTC
CGTCCTCTACTTGCTGGCCTGCACCCCAAAAGACAACGAGGAGCAGCTGGGACTTCCCTGGGCCAATGGCCCCATAGGGA
AAGAAGGGTACCAGGCTGTCCTGCAGGAGTGGGAAGAGCAGCACCGCAACTATATCAGCAGCCTCAAGCGGCAGATCTTG
CAGCTCAAAGAGGAGCTGCAGGAGAGGAGCACGCAACTCAAGTATGCGCAGCAACAGGCCAGTGACCCTGCGGGCCTGGA
TCCAGGCCCCCCGGAGAAGACCCAGGCCGACCTGCTGGCCTTCTTGCACTCCCAGGTGGAGAGGGCGGAGGTGCATGCCG
GTGTCAAGCTGGCCACTGAGTATGCAGCCGTGCCTTTCGACAGTTTCACCCTGCAGAAAGTGTACCAATTAGAGACTGGC
CTGACTCGCCACCCCGAGGAAAAGCCAGTGAGGAAAGATAAGCGGGATGAACTGGTGGAAGCCATGGAATCTGCTCTGGA
GACCTTGAACAGCCCGGAGAAGAGCAGCCCCCATCACCGTCCTTACACCTCTTCGGATTTCATAGAAGGGATCTACCGAA
CGGAAAAGGATAAAGGCACTTTGTATGAGCTCACATTCAAAGGGGACCACAAGCATGAATTCAGAAGACTTATCTTGTTT
CGACCTTTTTGCCCCATCATGAAAGTGAAAAAGAACGACTCAACATGGCCAATATACTTATCAACGTGATCGTGCCGCTA
GCAAAGAGAGTGGACAAGTTCCAGCAGTTCATGCAGAATTTC
ORF - retro_eeur_356 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
94.33 % |
Parental protein coverage: |
53.02 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | VRMIRRGLLSWVSRVAVLLVLLCCVISVLYLLACTPKGNEEQLGLPWANGPTGKEGYQAVLQEWEEQHRN |
| VRMIRRGLLSWVSRVAVLLVLLCCVISVLYLLACTPK.NEEQLGLPWANGP.GKEGYQAVLQEWEEQHRN |
Retrocopy | VRMIRRGLLSWVSRVAVLLVLLCCVISVLYLLACTPKDNEEQLGLPWANGPIGKEGYQAVLQEWEEQHRN |
|
Parental | YISSLKRQISQLKEELQERSTQLKNAQQQASDPAGLDPGPPEKTQADLLAFLHSQVERAEVHAGVKLATE |
| YISSLKRQI.QLKEELQERSTQLK.AQQQASDPAGLDPGPPEKTQADLLAFLHSQVERAEVHAGVKLATE |
Retrocopy | YISSLKRQILQLKEELQERSTQLKYAQQQASDPAGLDPGPPEKTQADLLAFLHSQVERAEVHAGVKLATE |
|
Parental | YAAVPCDEGALQKVYQLETGLAGHPEEKPVRKDKRDELVEAIESALETLNSPEESSPHHRPYTSSDFIEG |
| YAAVP.D...LQKVYQLETGL..HPEEKPVRKDKRDELVEA.ESALETLNSPE.SSPHHRPYTSSDFIEG |
Retrocopy | YAAVPFDSFTLQKVYQLETGLTRHPEEKPVRKDKRDELVEAMESALETLNSPEKSSPHHRPYTSSDFIEG |
|
Parental | IYRTEKDKGTLYELTFKGDHKHEFRRLILFRPFGPIMKVK-KERLNMANTLINVIVPLAKRVDKFRQFMQ |
| IYRTEKDKGTLYELTFKGDHKHEFRRLILFRPF.PIMKVK.KERLNMAN.LINVIVPLAKRVDKF.QFMQ |
Retrocopy | IYRTEKDKGTLYELTFKGDHKHEFRRLILFRPFCPIMKVK<KERLNMANILINVIVPLAKRVDKFQQFMQ |
|
Parental | NF |
| NF |
Retrocopy | NF |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
5 .00 RPM |
10 .15 RPM |
SRP017611_kidney |
0 .38 RPM |
1 .69 RPM |
SRP017611_liver |
0 .16 RPM |
0 .64 RPM |
Erinaceus europaeus was not studied using ChIP-Seq data.
Erinaceus europaeus was not studied using EST data.
Erinaceus europaeus was not studied using FANTOM5 data.
retro_eeur_356 was not experimentally validated.
Retrocopy orthology:
Erinaceus europaeus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.