>retro_eeur_388
GTGCTGAGCTCTTCACCTCCTTTTAGACTCAGCTCTACCAAGTTTTCAGGTTTTGCCCTTGAAGATCTCAGAAAGGCCTT
TAACATTAAGACTGCGAATGCTGTGTGTGTTTATCATGAACCGATTGAATTCCCAGAGCAGTAGTTTCAGTCAATGCAGG
AGAATGGCTCTTGGGATTGTTACTCTTCTTGTTGATGTGATATGGGTGGCATCCTCTGAACTTACGTCTTAGGTTTTTAC
TCAGTACAACAAACCATTCTTCAGCACCTTTGCAAAAACATCAATGTTTGTTCTCTACCTTTTGGGTTTTATTGTTTGGA
AGCCATGGAGACAGCAGTGTACAGGAAGATTTCGAGGAAAGCATGCTGCTTTTTTTTTAACAGATGCTGAAGGCTACTTT
GCTGCTTGCTCAACAGACACAACTATTAACAATTCGTTGAGTGAGCCCTTATATGTTCCTGTGAAGTTTCATGATCTTCC
AAGTGAAAAATCTGAGAACACAAATATTGACACTGAAAAAACTCCCAAAAAGTCTCGTGTAAGGTTCACTAATATCATGG
AGATTTGACAACTTCCGTCAAGCCATGCATTGGAAGCTAAGTTGTCTCCCATGTCATACCCTACTGTGAAAGAACAAGAA
TTTTTACTCAAAACTGTTGGAAAACTTAACTGCCACTCAAGTAGCAAAAATTAGTGTTTTTTTTTTTCTTTGTGTGGTTT
TTGGCGAATTTGTCATATCAAGAAGCTCTTTCAGACACACAAACTGCTATAGTTAATATTTTATCTTCAACTTCTGGACT
TTTTCCCCTAATTCTTGCTGCAGTGTTTCCAAATAACAGTGGCGATAGATTTATTCTTCCTAAACTATTAGCTATGATTT
TAAGTATTGGATGCATTGTGCTGGTAAACCTGTCAGGGTCTGAAAAATCTGCTGGAAGAGATACAATA
ORF - retro_eeur_388 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
88.71 % |
Parental protein coverage: |
76.4 % |
Number of stop codons detected: |
2 |
Number of frameshifts detected |
3 |
Retrocopy - Parental Gene Alignment:
Parental | VLSSSPPFRLSSAKFSGFALEDLRKAFNI-RLQMLCVFIMNRLNSQSSGFSQRRRMALGIVILLLVDVIW |
| VLSSSPPFRLSS.KFSGFALEDLRKAFNI.RL.MLCVFIMNRLNSQSS.FSQ.RRMALGIV.LL.VDVIW |
Retrocopy | VLSSSPPFRLSSTKFSGFALEDLRKAFNI>RLRMLCVFIMNRLNSQSSSFSQCRRMALGIVTLL-VDVIW |
|
Parental | VASSELTSYVFTQYNKPFFSTFAKTSMFVLYLLGFIVWKPWRQQCTRRFRGKHAAFF-TDAEGYFAACST |
| VASSELTS.VFTQYNKPFFSTFAKTSMFVLYLLGFIVWKPWRQQCT.RFRGKHA....TDAEGYFAACST |
Retrocopy | VASSELTS*VFTQYNKPFFSTFAKTSMFVLYLLGFIVWKPWRQQCTGRFRGKHAXXXXTDAEGYFAACST |
|
Parental | DTTINSSLREPLYVPV-FHDLPKEKSWNLNIDTEKTPKKSRVRFSNIMEIRQLPSSHALEAKLSRMSYPT |
| DTTIN.SL.EPLYVPV.FHDLP.EKS.N.NIDTEKTPKKSRVRF.NIMEI.QLPSSHALEAKLS.MSYPT |
Retrocopy | DTTINNSLSEPLYVPVKFHDLPSEKSENTNIDTEKTPKKSRVRFTNIMEI*QLPSSHALEAKLSPMSYPT |
|
Parental | VKEQEFLLKTVGKL-TATQVAKISFFFC-FVWFLANLSYQEALSDTQVAIVNILSSTSGLFTLILAAVFP |
| VKEQEFLLKTVGKL.TATQVAKIS.....FVWFLANLSYQEALSDTQ.AIVNILSSTSGLF.LILAAVFP |
Retrocopy | VKEQEFLLKTVGKL>TATQVAKISXXXX>FVWFLANLSYQEALSDTQTAIVNILSSTSGLFPLILAAVFP |
|
Parental | SNSGDRFTLSKLLAVILSIGGVVLVNLSGSEKSAGRDTI |
| .NSGDRF.L.KLLA.ILSIG..VLVNLSGSEKSAGRDTI |
Retrocopy | NNSGDRFILPKLLAMILSIGCIVLVNLSGSEKSAGRDTI |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
1 .45 RPM |
10 .15 RPM |
SRP017611_kidney |
10 .13 RPM |
59 .82 RPM |
SRP017611_liver |
3 .05 RPM |
14 .47 RPM |
Erinaceus europaeus was not studied using ChIP-Seq data.
Erinaceus europaeus was not studied using EST data.
Erinaceus europaeus was not studied using FANTOM5 data.
retro_eeur_388 was not experimentally validated.
Retrocopy orthology:
Erinaceus europaeus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.