RetrogeneDB ID: | retro_etel_1028 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_201855:9885..10291(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HRAS | ||
Ensembl ID: | ENSETEG00000019899 | ||
Aliases: | None | ||
Description: | Harvey rat sarcoma viral oncogene homolog [Source:HGNC Symbol;Acc:5173] |
Percent Identity: | 71.74 % |
Parental protein coverage: | 71.96 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFE-DVHQYREQIKRVKDSDDVPMVLVGNKCDLP |
LDILDT.GQEEYSAMRDQYMRTGEGFLCVFA.NN.KS...D...YREQIKRVKDSDD.PM.LVGNKCDLP | |
Retrocopy | LDILDTEGQEEYSAMRDQYMRTGEGFLCVFALNNNKSLQ<DINLYREQIKRVKDSDDIPMMLVGNKCDLP |
Parental | ARTVESRQAQDLARSYSLPYIETSAKTRQGVEDAFYTLVREIRQHKLR-KLNPPDESGPGCMNCKCVL |
.RTV...QA..LA.SY..P.IETSAKT.QGVE.AFYTLVRE.RQ.....K.N..D....GCM...CVL | |
Retrocopy | TRTVDTKQAHELAKSYGIPFIETSAKTWQGVEGAFYTLVRETRQY*MK<KRNSSDDGTQGCMGLPCVL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000015293 | 3 retrocopies | |
Echinops telfairi | ENSETEG00000000242 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000016893 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000019899 | 2 retrocopies |
retro_etel_1028 , retro_etel_391,
|
Macropus eugenii | ENSMEUG00000008467 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000006472 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000016611 | 1 retrocopy |