RetrogeneDB ID: | retro_etel_1393 | ||
Retrocopy location | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
| Coordinates: | scaffold_258764:16121..16483(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | EXOSC5 | ||
| Ensembl ID: | ENSETEG00000009358 | ||
| Aliases: | None | ||
| Description: | exosome component 5 [Source:HGNC Symbol;Acc:24662] |
Retrocopy-Parental alignment summary:
>retro_etel_1393
CGGCACTTTGCTTGCGAACAGAATCTACTGTCCTGACCAGATGGTCGGCCTCTTTCCTACAAGGCGATGCAGTGCTGGCA
GGTGTGTACCGGACTGCCTAAGTGAAGGTCAGCAAGGACATCTTCAATAAGGCCAAGCTGGAAGTGCTCCTGAGGCCGAA
GTTCAGGCTTCCAGGTGTGGCCGAAAAAAGCCAGGAGCGGCTGATCAGGAACACCTGCGAGGCAGTGGTTCTGGGGGTAC
TGCACCCCCGCACCTCCATCAACGTGGTGCTGCAGGTGGTCAGTGATGCTGGCTCCCTCCTGGCCTGTTGCCTGAATGCT
ACCTGCATGGCACTGGTGTATGCATGTGTGCCTGCCCATGCG
ORF - retro_etel_1393 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 84.55 % |
| Parental protein coverage: | 51.91 % |
| Number of stop codons detected: | 2 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | RHFACEQNLLSRPDG-SASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVLLRPKIGLPGVAEKSRERL |
| RHFACEQNLLS.PDG.SASFLQGD..VLAGVY..A.VKVSK.IFNKA.LEVLLRPK..LPGVAEKS.ERL | |
| Retrocopy | RHFACEQNLLS*PDG<SASFLQGD-AVLAGVYRTA*VKVSKDIFNKAKLEVLLRPKFRLPGVAEKSQERL |
| Parental | IRNTCEAVVLGALHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVPMRA |
| IRNTCEAVVLG.LHPRTSI.VVLQVVSDAGSLLACCLNA.CMALV.A.VP..A | |
| Retrocopy | IRNTCEAVVLGVLHPRTSINVVLQVVSDAGSLLACCLNATCMALVYACVPAHA |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Echinops telfairi was not studied using RNA-Seq expression data.
Echinops telfairi was not studied using ChIP-Seq data.
Echinops telfairi was not studied using EST data.
Echinops telfairi was not studied using FANTOM5 data.
retro_etel_1393 was not experimentally validated.
Retrocopy orthology:
Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Echinops telfairi | ENSETEG00000009358 | 1 retrocopy |
retro_etel_1393 ,
|
| Sorex araneus | ENSSARG00000010083 | 1 retrocopy |