RetrogeneDB ID: retro_etel_2180

Retrocopy location

• Organism: Lesser hedgehog tenrec (Echinops telfairi)
• Coordinates: scaffold_91581:492..734(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSETEG00000006509
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSETEG00000019179
• Aliases: None
• Description: None

Sequence

>retro_etel_2180
CTGAACACTCTCCAACTTTTAACCCTCTTGTTGTTTTGTTTCTTTGTTTTTGGTGGGCTCCCCCAACTATCATTCAAGAA
CTGGGCTGCCGCCTTTGTCACCAGCAACCACTTGTTGGCAAGAGACAGGAACTTCTCTACAGTCGCTCTGTCGGTTCCCG
GGTCATAGAAAGCATTCTATATGCAGCTTTGGCTGCTGGGCCCCTTGAATCTCGCAGGTCTTGGTCTTTGAGCCATGAAG
CT

Alignment

ORF - retro_etel_2180 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 50.6 %
• Parental protein coverage: 97.59 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  LNIQRLLNLWAFFVYSNRASPQPVVRN-AAAFFTGNLLLARDRNLLTKSVLWLPGPYKEFCMK-ALAACC
          LN...LL.L..F........PQ....N.AAAF.T.N.LLARDRN..T...L..PG..K.F.M..ALAA..
Retrocopy LNTLQLLTLLLFCFFVFGGLPQLSFKNWAAAFVTSNHLLARDRNFSTVA-LSVPGS*KAFYMQ<ALAAGP

Parental  RESLRSWSLSLRA
          .ES.RSWSLS..A
Retrocopy LESRRSWSLSHEA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Echinops telfairi was not studied using RNA-Seq expression data.

ChIP-Seq

Echinops telfairi was not studied using ChIP-Seq data.

EST

Echinops telfairi was not studied using EST data.

TSS

Echinops telfairi was not studied using FANTOM5 data.

Lab

retro_etel_2180 was not experimentally validated.

Homology

Retrocopy orthology:

Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Echinops telfairi	ENSETEG00000019179	1 retrocopy	retro_etel_2180 ,