RetrogeneDB ID: | retro_etel_295 | ||
Retrocopy location | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
| Coordinates: | GeneScaffold_4865:160858..161696(+) | ||
| Located in intron of: | ENSETEG00000014085 | ||
Retrocopy information | Ensembl ID: | ENSETEG00000014089 | |
| Aliases: | None | ||
| Status: | KNOWN_PSEUDOGENE | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | PANX1 | ||
| Ensembl ID: | ENSETEG00000016712 | ||
| Aliases: | None | ||
| Description: | pannexin 1 [Source:HGNC Symbol;Acc:8599] |
Retrocopy-Parental alignment summary:
>retro_etel_295
TTACAGCAGAAGGACTCCCTGAAGAGCGACTCTGGATGCCTTCTGCTGCCACTGCACAAGTTTTCCCCCACCTCCTGTTA
CTACTTGTGATCCTCTGATACTTGCTCTCATTGTTTTGGTGTTTCGCAGCTGCTCATCTTTGCTCATATCTGAAGTTGAC
CATGAAAAGAATTTGACAAAGTTTACAAATGTGCAATTAAAGCTGCCAGGAGTGTCCATGACCTCGACATGAGAGATGGT
GCCTGATCAGTTACAGCTGCTAATGAGAACATAGGAAAACATTTGTGAGAGATAGCTGAAAGCCACTTCAAGTACCCAAT
TGTGGAGGAGTACTTAAAGACAAAGAAAAACTCTTATGAATGAACAGTCAAGGATCTCAGCTGCCGCGGGCAAACACTCA
CGATTCTAGTGGCTTTGTGTCTACCTGGGCTATTACTTTAGCCTCTCCTCGCTGTCGGATGAGTTTGTCTGCAACATCAA
GTCTGGGATCCTGAAGAATGACAGCACTGTACCTGACCAGCTCCAGTGTAAACTCATAGCAGTGGGCACCTTCCCTCTTC
TCTGCTTCATTCATGTGGTGGTCTTTGCTCTGCTGACCCCTGTCGTCTGTACGCTATTGATTCCATTCTGACAGAAGACA
GATGTCCTCAAAATGTATGAGACCCTGTCTATATTTGATGCGCTGCATATCAAGTCTGATGGGTACAAAGACTTGAGCCT
CCACAATCTTTTTCTTGAAGAGAAGATCAACGAACCCAAGTCATACAATTGCTTTAAGATACTATAAAACATCAAAAGCA
ACGGTCAGGGAATTGACCTGATACTTCTGATAACAAGC
ORF - retro_etel_295 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 72.28 % |
| Parental protein coverage: | 66.04 % |
| Number of stop codons detected: | 6 |
| Number of frameshifts detected: | 3 |
Retrocopy - Parental Gene Alignment:
| Parental | VQQKDALQSDSGRLPLWLHKF-FPYILLLLAILLYLPSLFWRFEAAPHLCSDLKFIME-ELDKVYNRAIK |
| .QQKD.L.SDSG.L.L.LHKF.FP..LLLL.IL.YL.SLFW.F.AA.HLCS.LK..M..E.DKVY..AIK | |
| Retrocopy | LQQKDSLKSDSGCLLLPLHKF<FPHLLLLLVIL*YLLSLFWCFAAA-HLCSYLKLTMK>EFDKVYKCAIK |
| Parental | AAKSVRDLDMRDGACSVTAAHENVGQSLWEISESHFKYPIVEQYLKTKKNSYNLIVKYLTCRVLTLMIIV |
| AA.SV.DLDMRDGA.SVTAA.EN.G..L.EI.ESHFKYPIVE.YLKTKKNSY...VK.L.CR..TL..I. | |
| Retrocopy | AARSVHDLDMRDGA*SVTAANENIGKHL*EIAESHFKYPIVEEYLKTKKNSYE*TVKDLSCRGQTLT-IL |
| Parental | LA-CAYLGYYFSLSSLSDEFVCSIKSGILKNDSSVPDRFQCKLIAVGIFQLLSLINMVVFALLAPVVVYT |
| .A.C.YLGYYFSLSSLSDEFVC.IKSGILKNDS.VPD..QCKLIAVG.F.LL..I..VVFALL.PVV..T | |
| Retrocopy | VA>CVYLGYYFSLSSLSDEFVCNIKSGILKNDSTVPDQLQCKLIAVGTFPLLCFIHVVVFALLTPVVC-T |
| Parental | LLVPFRQKTDVLKVYEILPTFDVLHFKSDGYNDLSLYNLFLEENINELKSYKCLKILENIKSNCQGIDPM |
| LL.PF.QKTDVLK.YE.L..FD.LH.KSDGY.DLSL.NLFLEE.INE.KSY.C.KIL.NIKSN.QGID.. | |
| Retrocopy | LLIPF*QKTDVLKMYETLSIFDALHIKSDGYKDLSLHNLFLEEKINEPKSYNCFKIL*NIKSNGQGIDLI |
| Parental | LLLTN |
| LL.T. | |
| Retrocopy | LLITS |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Echinops telfairi was not studied using RNA-Seq expression data.
Echinops telfairi was not studied using ChIP-Seq data.
Echinops telfairi was not studied using EST data.
Echinops telfairi was not studied using FANTOM5 data.
retro_etel_295 was not experimentally validated.
Retrocopy orthology:
Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Echinops telfairi | ENSETEG00000016712 | 1 retrocopy |
retro_etel_295 ,
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