RetrogeneDB ID:

retro_etel_370

Retrocopy
location
Organism:Lesser hedgehog tenrec (Echinops telfairi)
Coordinates:GeneScaffold_6227:4861..5376(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:ANXA5
Ensembl ID:ENSETEG00000002187
Aliases:None
Description:annexin A5 [Source:HGNC Symbol;Acc:543]


Retrocopy-Parental alignment summary:






>retro_etel_370
GGGACACGTCAGAGAATGCTGGTGGCTCTCCGCCAGGCTCGTCGAGACCCTGATACTGGATTGGATGAAGCCCCAGTCGA
GCAAGATGCTCAGGTTTTGTTTTAAGCCGGGGAACTCAAATGGGGGATGGGTGAAGAATAGTTTATCACCATCTTTGGAA
CTCGAAGTGTGTCGCATTTGAGAAGGGTCTTTGACAAATACATGACCATGTCAGGATTTCCAGTGGAGGAATCCATTGAC
CGGGAGACTTCTGGAAATTGGGAGCAACTGCTACTCGCTGTTGTAAAGGCTACTCGAAGTACACCCGCCCACCTGGCAGA
CACCCTCGCCCATGCTACGCAGACCGATGACCATACCTCATCAGAGTGGTGGTTTCCCAGAGTGAGATCGATCTGTTTAA
CATAAGAATGGAGTTTAGGAAGAATTTTGCCACCTCTCTTTGTTCCATGATTAAGGGGGAGACATCTGGGGACTATAAGA
AAACCCTCCTGATGCTCTGTGGAGGAGAAGACGAC

ORF - retro_etel_370 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 78.41 %
Parental protein coverage: 54.52 %
Number of stop codons detected: 2
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalGYYQRMLVVLLQTNRDPDTGVDEAQVEHDAQVLFRAGELKWGTDEEKFITIFGTRSVSHLRRVFDKYMTI
G..QRMLV.L.Q..RDPDTG.DEA.VE.DAQVLF.AGELKWG..EE.FITIFGTRSVSHLRRVFDKYMT.
RetrocopyGTRQRMLVALRQARRDPDTGLDEAPVEQDAQVLF*AGELKWGMGEE*FITIFGTRSVSHLRRVFDKYMTM
ParentalSGFQIEETIDRETSGNLEQLLLAVVKSIRSIPGYLAETLYRALKGAGTDDHT-LIRVVVSRSEIDLFNIR
SGF..EE.IDRETSGN.EQLLLAVVK..RS.P..LA.TL..A.....TDDHT.LIRVVVS.SEIDLFNIR
RetrocopySGFPVEESIDRETSGNWEQLLLAVVKATRSTPAHLADTLAHATQ---TDDHT<LIRVVVSQSEIDLFNIR
ParentalKEFRKNFASSLYSMIKGDTSGDYKKALLMLCGGEDD
.EFRKNFA.SL.SMIKG.TSGDYKK.LLMLCGGEDD
RetrocopyMEFRKNFATSLCSMIKGETSGDYKKTLLMLCGGEDD

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Echinops telfairi was not studied using RNA-Seq expression data.
Echinops telfairi was not studied using ChIP-Seq data.
Echinops telfairi was not studied using EST data.
Echinops telfairi was not studied using FANTOM5 data.
retro_etel_370 was not experimentally validated.

Retrocopy orthology:
Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 5 parental genes, and 9 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000217461 retrocopy
Echinops telfairi ENSETEG00000002187 3 retrocopies
retro_etel_1728, retro_etel_370 , retro_etel_901,
Echinops telfairi ENSETEG000000182991 retrocopy
Macropus eugenii ENSMEUG000000038533 retrocopies
Otolemur garnettii ENSOGAG000000038781 retrocopy



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