RetrogeneDB ID: | retro_etel_370 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | GeneScaffold_6227:4861..5376(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ANXA5 | ||
Ensembl ID: | ENSETEG00000002187 | ||
Aliases: | None | ||
Description: | annexin A5 [Source:HGNC Symbol;Acc:543] |
Percent Identity: | 78.41 % |
Parental protein coverage: | 54.52 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | GYYQRMLVVLLQTNRDPDTGVDEAQVEHDAQVLFRAGELKWGTDEEKFITIFGTRSVSHLRRVFDKYMTI |
G..QRMLV.L.Q..RDPDTG.DEA.VE.DAQVLF.AGELKWG..EE.FITIFGTRSVSHLRRVFDKYMT. | |
Retrocopy | GTRQRMLVALRQARRDPDTGLDEAPVEQDAQVLF*AGELKWGMGEE*FITIFGTRSVSHLRRVFDKYMTM |
Parental | SGFQIEETIDRETSGNLEQLLLAVVKSIRSIPGYLAETLYRALKGAGTDDHT-LIRVVVSRSEIDLFNIR |
SGF..EE.IDRETSGN.EQLLLAVVK..RS.P..LA.TL..A.....TDDHT.LIRVVVS.SEIDLFNIR | |
Retrocopy | SGFPVEESIDRETSGNWEQLLLAVVKATRSTPAHLADTLAHATQ---TDDHT<LIRVVVSQSEIDLFNIR |
Parental | KEFRKNFASSLYSMIKGDTSGDYKKALLMLCGGEDD |
.EFRKNFA.SL.SMIKG.TSGDYKK.LLMLCGGEDD | |
Retrocopy | MEFRKNFATSLCSMIKGETSGDYKKTLLMLCGGEDD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000021746 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000002187 | 3 retrocopies |
retro_etel_1728, retro_etel_370 , retro_etel_901,
|
Echinops telfairi | ENSETEG00000018299 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000003853 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000003878 | 1 retrocopy |