RetrogeneDB ID: retro_etel_867

Retrocopy location

• Organism: Lesser hedgehog tenrec (Echinops telfairi)
• Coordinates: scaffold_177864:212..1359(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: FKBP5
• Ensembl ID: ENSETEG00000018432
• Aliases: None
• Description: FK506 binding protein 5 [Source:HGNC Symbol;Acc:3721]

Sequence

>retro_etel_867
ACTACTGATGAAGGTTCCAGGAACAATGGAGAGAGCCTAGCTGCAGCTGTTGCTGACCGAGGACACGATATTACCACGAA
GAAGGACAGAGGAGTATTAAAGATGGTCAAAAGAGTGGGGACTAGTGATGAAAACCCAATGATTAGAGATAAAGCTTCAG
TCAATTACAAAGGAAAAGTGTCAAATGGAAAGAAGTCTGATTCCAGTCATGATAGGAATGAGCCAGTTTTCTTTAGTCTT
AGCAAGGGCCAAGCTATGAAAGCATGGCACATTGGGGTGGCTACAATGATGAAAGGGGAGACCTGCCTCTTACCATGTAA
GGCAGAGGACGCATATGGCTCAGCTGGCAGCATCCCCCAAATCTCCTGGAATGCCACTCTCCCTTTAGAAACTGAGCTCC
TTGGTTTCAAAGGAGAGGATTTATTTGAAGAGAGAGGCATTATCCAGAGAATCAAACAGAAAGGAGAGGGATACTCAAAC
CCAAATGAAGGTGCTACATTAGAAATAATACCAGCTGGGCCACTGTGGTGGGCAGCTGTTTGACATCCGAAGTTGTATTT
GGACAAAGGAAGATCATTACATTCCAATTAGAATTGACAAAGCCCTGGAGAAAATGCAGAGGGAAGAGCAATGCATTTTA
CATCTCAGACCACTATGTGGCTTGGGAGAGGTAGGCAAGCCTAGATTTGGCTTTGAGCCTAACACTGATTTCACATATGA
AGTTCCCTTAAGAGCTTCAAAAAGGCCAAAGGATTCTGGGAGATGAAGACCAAAGAAGAGAAATTGCATCAGGCTGCCCT
GGTCAAAGAGAAGGGAACCATTTTCTTCAAGGGAGGCAAGTATATGCAGGCTGTGATTCAGTATGCAAAGATAGCGTCCT
GGCAAAAAATGGAGTATGGCTTATCAGGAAAGGAATAGAAAGCTTTTGGATCATTTCTGCTCACTGTCTTTCTGAACCTG
GCTCGCCATGTGTACCTGAAGCTTAGAGAGTACACTGAAGCTATTGGATGCTGTGGTAAGGCTTTAGGACTGGATAGTGC
CAACGAGAAAGAGCTTGTACCAGAGGGGGAAAGCCCAGCTGCTTATGAATGAGTTTGAGTCAGCCAAGGTGGACTTTGAG
AATGTGCTGGAAGTGAATCCCCAGAAC

Alignment

ORF - retro_etel_867 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 74.23 %
• Parental protein coverage: 83.62 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  TTDEGAQNNGESPAAAVADRGEDITSKKDRGVLKIVKRVGTSDEKPMIGDKVSVHYKGKLSNGKKFDSSH
          TTDEG..NNGES.AAAVADRG.DIT.KKDRGVLK.VKRVGTSDE.PMI.DK.SV.YKGK.SNGKK.DSSH
Retrocopy TTDEGSRNNGESLAAAVADRGHDITTKKDRGVLKMVKRVGTSDENPMIRDKASVNYKGKVSNGKKSDSSH

Parental  DRNEPFIFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGAAGSVPKIPSNATLFFEIELLDFKGED
          DRNEP..FSL.KGQ..KAW.IGVATM.KGE.C.L.CK.E.AYG.AGS.P.I..NATL..E.ELL.FKGED
Retrocopy DRNEPVFFSLSKGQAMKAWHIGVATMMKGETCLLPCKAEDAYGSAGSIPQISWNATLPLETELLGFKGED

Parental  LFEDGGIIRRIKQKGEGYSNPNEGATVEI-HLVGHCGGQLFDSRDVIFIVGEGEDHDIPIGIDKALEKMQ
          LFE..GII.RIKQKGEGYSNPNEGAT.EI....GHCGGQLFD.R..I......EDH.IPI.IDKALEKMQ
Retrocopy LFEERGIIQRIKQKGEGYSNPNEGATLEI>YQLGHCGGQLFDIRSCIW---TKEDHYIPIRIDKALEKMQ

Parental  REEQCLLYLGPRYGFGEAGKPKFGIEPNAELTYEV-TLKSFEKAKESWEMDTK-EKLEQAAMVKEKGTVY
          REEQC.L.L.P..G.GE.GKP.FG.EPN...TYEV..LKSF.KAK..WEM.TK.EKL.QAA.VKEKGT..
Retrocopy REEQCILHLRPLCGLGEVGKPRFGFEPNTDFTYEV<SLKSFKKAKGFWEMKTKEEKLHQAALVKEKGTIF

Parental  FKGGKYTQAVIQYGKIVSWLEMEYGLSEKELKASESFLLAAFLNLAM-CYLKLREYSKAVECCDKALGLD
          FKGGKY.QAVIQY.KI.SW..MEYGLS.KE.KA..SFLL..FLNLA...YLKLREY..A..CC.KALGLD
Retrocopy FKGGKYMQAVIQYAKIASWQKMEYGLSGKE*KAFGSFLLTVFLNLARHVYLKLREYTEAIGCCGKALGLD

Parental  SANE-KGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN
          SANE.K.LY.RG.AQLLMNEFESAK.DFE.VLEVNPQN
Retrocopy SANE>KSLYQRGKAQLLMNEFESAKVDFENVLEVNPQN

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Echinops telfairi was not studied using RNA-Seq expression data.

ChIP-Seq

Echinops telfairi was not studied using ChIP-Seq data.

EST

Echinops telfairi was not studied using EST data.

TSS

Echinops telfairi was not studied using FANTOM5 data.

Lab

retro_etel_867 was not experimentally validated.

Homology

Retrocopy orthology:

Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 17 retrocopies.

Species	Parental gene accession	Retrocopies number
Dasypus novemcinctus	ENSDNOG00000004678	1 retrocopy	retro_dnov_1280,
Echinops telfairi	ENSETEG00000003358	8 retrocopies	retro_etel_1114, retro_etel_1484, retro_etel_1491, retro_etel_1499, retro_etel_1774, retro_etel_2130, retro_etel_2200, retro_etel_997,
Echinops telfairi	ENSETEG00000007454	1 retrocopy	retro_etel_2059,
Echinops telfairi	ENSETEG00000018432	1 retrocopy	retro_etel_867 ,
Echinops telfairi	ENSETEG00000018990	2 retrocopies	retro_etel_186, retro_etel_2071,
Homo sapiens	ENSG00000096060	4 retrocopies	retro_hsap_4255, retro_hsap_4260, retro_hsap_4262, retro_hsap_4318,