RetrogeneDB ID:

retro_falb_1

Retrocopy
location
Organism:Flycatcher (Ficedula albicollis)
Coordinates:AGTO01003143.1:307..3115(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSFALG00000015332
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSFALG00000012537
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_falb_1
TCCTCCACAGCCATGGCCTCGCCAGAGGACACACAAGAGGGGGATGCAAAGGCACAGCTCCTGGCAGAGGCATTTCAGAA
GGAAGGACTGGATGCTGGATACTGGCTGCCCAAAATGTCACAGATCCTGGGAATCAAGTGCAGAGAAGCCCTGCAGCATC
TGGAATATAAAGACTACCTCAAGCTGGAGTGTGAGGTACGGCACCCCTGGGAGAAAAAGGCACTCCAGAAACTCCTGAAT
ATAACAGATGACAAAACAGCCTCTAAAGAGGTGCAAAAGGAGCACATGGAGAAGGCAAAGCAAAGGCAGGAAGTGGCCAA
ACAAGCCCTGAAAGATCTGACAGAAATGCTCAACAGCCACAGCCACAGCCAGGATGTGCTGAGGGAGCAAGCAGAGACTC
TGTGGCAAGCCATGGAGATTCCCAAAGAGTTCTGGCCATCGCCAAAGGAACCCTTGGCAGAAATGCTGGAGAGCATCCAT
AAGCAGCTGGAGCAGCAGCAGGAGATGTCAGCAGGCAGGAGGGAGAACATCCCTGACACCGAGGTGCTGAGGCGGGCGTC
GGGGGGACTGGCCCTGCAGGGCATCTACAGAACCAGCAGAGCTGGAGATGTGCTGGCAACGCGAGAGCAGCTCCTCAGGG
TTCCTGAGGGATTCCAGCTCGCCGGTCCAGAGCAAGGATCAATGCTTGAGAGGAGGGAGTTCTCCTCCTCTGCAGCAGAA
TCCACTTTCACCAAGTCCATGGAGCAGCTGGGGTTCAGCATGAGCATTTCTACCAAATTTGCATTCTGGAAAGTTAATCC
GGGAGCGGTTGTAGATCACAGCAGCTCCTCGCAGTCCGACGCCACCCACCAGTGCCACTCTGAGCAGAGCTACTTCTGCA
CCACCAAGTTCCAGTACATCCCCCTGGCCTCCTGCTACTTCCAAAGGCATCAGCTTTGCCTCTCGGATGCGGCTCTGCGG
GAGCTGCAAGACATGGAGCAGATTTTGGGCTTCACTCGGAAAGAGGACAACCCAGACTTTGTGAAAATGTGTGAGAGCTT
CTTCAGCAGGTTTGGATCCCACATAAACCAGGGTCCCCTCCACTTTGGGGGGATATTCTGGTGGAAGGCGTCCACAGAAG
GATTCCAAGCTGAGCAACAGGAAGAGGTGAAGCGACAAACATCTGCAGCACTGAACAGCTTTGTCAGGAAGAGCTATGGT
GACTTCCCCGCAAGTGCTGCAGGGGCCCTGGATGTTTCCAAATCCATCTCACAGGCTTCTGTCCTGGGAAGAACCGGAGA
GAATTCCCATTCAGCCATTCAGCTCTCTGTGATCAACACAGGGGGCCCAGCAGACACAACTTCTCTTCCTCAGTGGAAAA
CGGGGCTCGTGTCTGATAACACAACGTGGTGCGTTATCGACCGTGGCTTTGAGCTGATCCCAGTGTGGGACGTCATCCTG
TGCAATCACAGTGGGGATTTTAAGTCTATTGATCAGATGAGCGGAGCCCTCAGGGATGCGTACAAAGCGCTGACGAATGA
GAGTGTTGGAACCATTTTTGGAGAGGACCTGGGCAGTGCAGTGCAAGAGGCCAGAGATTTCATGGAGACTGTGAAGGCCT
GGGAGGTACCAGCGGATGAAAGGAAGCTGCTCCTGCTGATGGAGCTCAAAGATGATCTGAATGCAAAAACCAGGAACCAC
AGTGTGTGGATCAATGTGTGCCTGTCAGACAAAGCCCTGCAGGACTTCCTGGTGAACACTGTGTGGAGCTACAAGGAGTC
ACCTCCAGAAAGCACCTCCTCTGTCAAGGTAATGCTGAGAAGCCTCCTGGATCCTCACATCTACTCTGTCAAGGACTTCC
CTGAGGCTTCTTTCATTATGCAATGGATCTTCCAGACTGAGCACCAGCTTCCCGTATCTCCCAAAATCTCTGAGCTTGAA
GAACTCATCAAAACACTGAAGCAAATGAAGGAGCACATCTATGCTGTCACCTACGCACCAGGAAGCTCTGCTTCTGCCGT
TCATGAAGCAAAGATAAAAGCCACCCTGACCAGCAGCCTCGCCATTTATTCCTTACTCCAGTCTCTCCAGGAACGGGCTG
AGAAGGACATGGAACTGTTGGTGCTCTTGATTGTGACCAGCACAGGGTACCAGGTGGAAAGCAGCACTTTTCAGCACCTC
CTTGGACATCCAGAAATTCTGTACATGGCCAAGGAAATGGCAGAGGCATATGAGGAGTACGTGAACCTGAAGGAGCAGGA
TGCTGACACAGCTGAGGCCTCCCTTCTGCTGATGGGTCTGACTGTGACACCAGAAAGTCAAAAGCTGTCCCCTGAGCAGA
AGAGGGAGCGTTTAGTTTTCATGGAGGATCACATGAAAGGCTTGTGGTCCACACGGATAAAGAATCTCCTCCGAAAGCAC
AGTGCAGATGGAGACTGGGAGAGGCTGGAACAGGACTTGAATTCCTTGATCAGTGGGTGCTTGGATGACAAACTGGACAA
AAAGAAGATGCACAACATACTCACAGACCTGGAAGACACTTTTGCAAAATCTGAGGCACCCAGTGAGTCTCAACCAAAGC
CAGACAGCAGCCAATCCAAAGCAAATGAAGCCATTGCAAACCAGGAATTCCTCCAGTTGCTCAAGCGCCTTGGACTTGAA
AGTCACTATCCAAGAAAAATGGGGATGGGAGATTTCTGCACCATTTGCAGAACATCTCTGCAGGACAGCCAGCCCAGCAA
GGACAAGGAACTGCCCTTCTACTTCTTGCAAAAGCTCTTAACTGTGGATTACCAGGTGAGGTACTTGACTTGCTGGGAAA
CAAGCAGC

ORF - retro_falb_1 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 86.43 %
Parental protein coverage: 74.41 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalSSTAMASQEDTQEGDAKAQLLAEAFQKEGLDAGYWLPKMSQILGIKCREALQHLEYEDYLKLECAARHPW
SSTAMAS.EDTQEGDAKAQLLAEAFQKEGLDAGYWLPKMSQILGIKCREALQHLEY.DYLKLEC..RHPW
RetrocopySSTAMASPEDTQEGDAKAQLLAEAFQKEGLDAGYWLPKMSQILGIKCREALQHLEYKDYLKLECEVRHPW
ParentalEKKALKKLLNITDDKTASKEVQKEHLEKTKQRQEVAKQALKDLTEMLNSHSHSQDVLREQTETLWRAMEI
EKKAL.KLLNITDDKTASKEVQKEH.EK.KQRQEVAKQALKDLTEMLNSHSHSQDVLREQ.ETLW.AMEI
RetrocopyEKKALQKLLNITDDKTASKEVQKEHMEKAKQRQEVAKQALKDLTEMLNSHSHSQDVLREQAETLWQAMEI
ParentalPKEFWPSPKEPLAEMLESIHKQLEQQQEMSAGRRENIPDTEVLRRASGGLALQGIYRTSRAGDVLATREQ
PKEFWPSPKEPLAEMLESIHKQLEQQQEMSAGRRENIPDTEVLRRASGGLALQGIYRTSRAGDVLATREQ
RetrocopyPKEFWPSPKEPLAEMLESIHKQLEQQQEMSAGRRENIPDTEVLRRASGGLALQGIYRTSRAGDVLATREQ
ParentalLLRVPEGFQLAGPKQGSQLDSREFSSSAEESNFTMSMEQLGFSMRFSAKFFTLWGINLKDSVDYSRSSQS
LLRVPEGFQLAGP.QGS.L..REFSSSA.ES.FT.SMEQLGFSM..S.KF...W..N....VD.S.SSQS
RetrocopyLLRVPEGFQLAGPEQGSMLERREFSSSAAESTFTKSMEQLGFSMSISTKF-AFWKVNPGAVVDHSSSSQS
ParentalEATHQSYSEQSYFCTTKFQYIPLASCYFQRHQLHLSDAALRELQHMEQIMGFTQNEDNPIILLQEMCESF
.ATHQ..SEQSYFCTTKFQYIPLASCYFQRHQL.LSDAALRELQ.MEQI.GFT..EDNP......MCESF
RetrocopyDATHQCHSEQSYFCTTKFQYIPLASCYFQRHQLCLSDAALRELQDMEQILGFTRKEDNPDFV--KMCESF
ParentalFSRFGSHINQGPLHFGGIFWWKASTKGFRAEQREKVKRQTSEALNSFVRKSYGDVLESAAGALDVSTSSS
FSRFGSHINQGPLHFGGIFWWKAST.GF.AEQ.E.VKRQTS.ALNSFVRKSYGD...SAAGALDVS.S.S
RetrocopyFSRFGSHINQGPLHFGGIFWWKASTEGFQAEQQEEVKRQTSAALNSFVRKSYGDFPASAAGALDVSKSIS
ParentalKASVLRRAAESSHTAIQFYVANTGGPADTTSLPQWKTGLVSDNTTWCVIDRGFELIPVWDVILCNHSGDF
.ASVL.R..E.SH.AIQ..V.NTGGPADTTSLPQWKTGLVSDNTTWCVIDRGFELIPVWDVILCNHSGDF
RetrocopyQASVLGRTGENSHSAIQLSVINTGGPADTTSLPQWKTGLVSDNTTWCVIDRGFELIPVWDVILCNHSGDF
ParentalKSVGQMSRALRDAYKALTNESVGEIFGEELDSAVQEARDFMETVKAWEVTVDERKLHMLMEVKDDLSAKT
KS..QMS.ALRDAYKALTNESVG.IFGE.L.SAVQEARDFMETVKAWEV..DERKL..LME.KDDL.AKT
RetrocopyKSIDQMSGALRDAYKALTNESVGTIFGEDLGSAVQEARDFMETVKAWEVPADERKLLLLMELKDDLNAKT
ParentalKNHRVWTNVCLSDRALQDFLVNTVRSCQESPPESTSSIKVMLRSLLDPHIYFVKDFPEASFIMKWIFQNE
.NH.VW.NVCLSD.ALQDFLVNTV.S..ESPPESTSS.KVMLRSLLDPHIY.VKDFPEASFIM.WIFQ.E
RetrocopyRNHSVWINVCLSDKALQDFLVNTVWSYKESPPESTSSVKVMLRSLLDPHIYSVKDFPEASFIMQWIFQTE
ParentalHPLPRSPKISELEELIKTLQEMKEHIYAVTYAP
H.LP.SPKISELEELIKTL..MKEHIYAVTYAP
RetrocopyHQLPVSPKISELEELIKTLKQMKEHIYAVTYAP

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Ficedula albicollis was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Ficedula albicollis was not studied using ChIP-Seq data.

EST - click to see more details

Ficedula albicollis was not studied using EST data.

TSS - click to see more details

Ficedula albicollis was not studied using FANTOM5 data.

Lab - click to see more details

retro_falb_1 was not experimentally validated.

Retrocopy orthology:
Ficedula albicollis does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species Parental gene accession Retrocopies number
Ficedula albicollis ENSFALG00000012537 1 retrocopy
retro_falb_1 ,


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