RetrogeneDB ID: retro_falb_30

Retrocopy location

• Organism: Flycatcher (Ficedula albicollis)
• Coordinates: JH603958.1:19215..19752(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSFALG00000006208
• Aliases: None
• Description: None

Sequence

>retro_falb_30
ACCAGTGCTGAGAGCACCACCACAATCACTGGGACCACCAGCAACATCCCAGAAACAACCACAGTCCCTGGCACCACCAT
GACCGTCCCTGAAACCACCACAACACCTGGGACAACAATCTTCCCTGAGACCACCACAGTCCCTGGGACCACCAACACCA
TCCCAGGGAACCCCTCCAGTCCTGAGACCATTCCTACCATCCCTGAAACCACCACAAACCCAGACACCACCCCCACCTTC
CCGGAGACAAACACAACCCCTGGCACCACCACGACCACCCCTGAACTCTCCAGTGCTGAGACCAGCACCCCCTCTGGGAC
CAGCCCCACCTTCCCTGGGACCACCAGTGCTGAGAGCACCGCCACAATCACTGGGAGCACAACAGGCCCTGAGACCACCA
GCACCATCCCAGAGACGACCACAGCCCCTGGCACCACCTCGATCATCCCTGAGAGCTCCAGTCGTGAATCCAGCACCACA
ATCGCTGGGACCAAGCCCAGCCCTGAAACAGCCGTGACACCTGGAACCAGCACCACC

Alignment

ORF - retro_falb_30 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 50.27 %
• Parental protein coverage: 93.41 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  TLSETTSAIPGTTAS-PETISATPETTTVPDTANTFHPDITITSPEITTPYGTPMTFPGTSTSPETT-AL
          T..E.T..I.GTT...PET......T.TVP.T..T..P..TI..PE.TT..GT..T.PG...SPET....
Retrocopy TSAESTTTITGTTSNIPETTTVPGTTMTVPETTTT--PGTTIF-PETTTVPGTTNTIPGNPSSPETIPTI

Parental  PETTTTPATTTTVPETS---GADSSTP---SGTTSTFTGTTTT-PGTTSPETISTTPETTTNPDTTFTYP
          PETTT.P.TT.T.PET....G....TP...S..TST..GT..T.PGTTS.E...T....TT.P.TT.T.P
Retrocopy PETTTNPDTTPTFPETNTTPGTTTTTPELSSAETSTPSGTSPTFPGTTSAESTATITGSTTGPETTSTIP

Parental  ETTTTTGTTS----TSSPESTTTVPDTTNTFPETNTTPGTTTT
          ETTT..GTTS.....SS.ES.TT...T....PET..TPGT.TT
Retrocopy ETTTAPGTTSIIPESSSRESSTTIAGTKPS-PETAVTPGTSTT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Ficedula albicollis was not studied using RNA-Seq expression data.

ChIP-Seq

Ficedula albicollis was not studied using ChIP-Seq data.

EST

Ficedula albicollis was not studied using EST data.

TSS

Ficedula albicollis was not studied using FANTOM5 data.

Lab

retro_falb_30 was not experimentally validated.

Homology

Retrocopy orthology:

Ficedula albicollis does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Ficedula albicollis	ENSFALG00000006208	1 retrocopy	retro_falb_30 ,