RetrogeneDB ID:

retro_falb_6

Retrocopy
location
Organism:Flycatcher (Ficedula albicollis)
Coordinates:JH603236.1:2076417..2077815(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSFALG00000014194
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSFALG00000011278
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_falb_6
ATGTGCCGAGAGTCCCACTGGAAATGCCTCCTCCTCTCCATCCTCATGTATGGCTGCCTGGGTGCAGTGGCCTGGTGTCA
GCTGGCCAGAGTCACCAAGCTCAGCTTCGATAGCTCCTTCAAGGGCAAGTCTATGATCTACCACGACAGCCCGTGTTCGG
ACGGCTACGTTTACATCCCACTGGCCTTCCTCTCCATGCTCTATGTGGTGTACCTGGTGGAGTGCTGGCACTGCCACGTC
AAGAGGGAGCTGCAGTACAAGGCAGACGTGGACAGCGTGTACGAGTGCATCAGCCGCATGCAGCAGGCCACTCCGTGCAT
CTGGTGGAAGGCCATCAGCTACCACTTCGTGCGCAGGACCCGGCAGGTGACGCGCTACCGCAACGGCGACGCCTACACCA
CCACGCAGGTCTACCACGAGCGGGTCAACACCCACGTGGCTGAAGCCGAGTTTGACTACTCCCACTGCGGGTACAAGGAC
ATCTCCAAGGAGCTCCTGGGCTTGGAGAGCTATACAGCCACCAAGCTGAGGTTCACCAAGTGCTTCAGCTTTGCCAACAT
TGAGTCTGAGAACTCTTACCTGACTCAGAGAGCTCATTTCTTCACGGAGATCGAGGGGCTAGATGACTACATGGAGGTGA
GGGAAGGCATGCAGCTCAAAAACGTGGATTTTAAAGAGCTCATGATGGCCTACGGAGACCCGGACCACCTGCCGTGGTAC
GTGTCCCATTATGCCTTCTGGGTGGCAGCCGTCCTGATGGTCTCGTGGCCGCTCAGGGTGCTCATAGAGTACCGGACTGC
TTACGTGCACTACCACGTGGAGAAGCTGCTGGGGCTGGAGTACACGGCGCCCGCCGCGGCCGAGGAGCCCCTGTACCGGT
ACCGCATGCCCCGGGACGCCACGCAGGACAGCACCGAGCTGGAGTGGCACATCTGCACCAACCGGCAGCTGATCCCCAGC
TACTCGGAGGCCGTGCTCATGGACCTGGCCGGCTCCCCGGCCTACAGCAGCTACGCCGCGTGTCGCTACGGCGACGCGGC
CCACGGCTGCGAGCGCTGCCACCGGGCCTCCAGCACCTCCTCCATCTTCTCGCGCCACGCTTTCCACAGCTGCAGCGGCA
ACTCGCGCCTCTCCCTCAACACCAGCCGCTTCTCGCTCTGCCGCGTCCACGGCTCGCACAGGACAGGCCTCTGGCGGAGC
CGCAGCAGCAGCATCGCCGAGCGGGGCTGCCAGGATGAGCGGTGCTGCTCCTACTCCAGCCAGCTGGCTGTCAACGAGAG
CCCCCCGACCTACCACGACGCGCGCTTCTTCCCCGTCCTCATCGTGCACAGGCCGGAGGGGCAGGACAGGCGGCATTTCT
ACGTCAGGCGCTCCTCCTGCCTGGAAACCTCCCTGTGA

ORF - retro_falb_6 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 70.2 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMYGCMGAMTWCHVTKVTRLTFDSAYKGKSMMYHDSPCSNGYVYIPLAFLVMLYVVYLVECWHCYTRNELQ
MYGC.GA..WC....VT.L.FDS..KGKSM.YHDSPCS.GYVYIPLAFL.MLYVVYLVECWHC....ELQ
RetrocopyMYGCLGAVAWCQLARVTKLSFDSSFKGKSMIYHDSPCSDGYVYIPLAFLSMLYVVYLVECWHCHVKRELQ
ParentalYKVDVESVHERVQRMQQATPCIWWKAISYHYVRRTRQVTRYRNGDAYTTTQVYHERVNTHVAEAEFDYSN
YK.DV.SV.E...RMQQATPCIWWKAISYH.VRRTRQVTRYRNGDAYTTTQVYHERVNTHVAEAEFDYS.
RetrocopyYKADVDSVYECISRMQQATPCIWWKAISYHFVRRTRQVTRYRNGDAYTTTQVYHERVNTHVAEAEFDYSH
ParentalCGVKDISKDLIDLESYPATRLRFTKCFSFANVESENSYLTQRARFFTENEGLDDYMEAREGMHLKNVDFK
CG.KDISK.L..LESY.AT.LRFTKCFSFAN.ESENSYLTQRA.FFTE.EGLDDYME.REGM.LKNVDFK
RetrocopyCGYKDISKELLGLESYTATKLRFTKCFSFANIESENSYLTQRAHFFTEIEGLDDYMEVREGMQLKNVDFK
ParentalEYMVAFSDPDNLPWYVSHYVFWVAALLTLSWPLRVLNEYRTSYVHYHVEKLFGFDYVAVTPAEERSFCRR
E.M.A..DPD.LPWYVSHY.FWVAA.L..SWPLRVL.EYRT.YVHYHVEKL.G..Y.A...AEE.....R
RetrocopyELMMAYGDPDHLPWYVSHYAFWVAAVLMVSWPLRVLIEYRTAYVHYHVEKLLGLEYTAPAAAEEPLYRYR
ParentalMPRVNTVDSTELEWHIRSNQQLVPSYSEAVLMDLVGLSGCTSYSACRYGGYRQNCERCHRTISSSSIFSR
MPR..T.DSTELEWHI..N.QL.PSYSEAVLMDL.G.....SY.ACRYG.....CERCHR..S.SSIFSR
RetrocopyMPRDATQDSTELEWHICTNRQLIPSYSEAVLMDLAGSPAYSSYAACRYGDAAHGCERCHRASSTSSIFSR
ParentalSALSICNGSPRIPFSSSRFSLGRLYGSRRSCLWRSRSGSLNEQSCPTEQTRLSSQVTVEEEDPPPYQDAL
.A...C.G..R.....SRFSL.R..GS.R..LWRSRS.S..E..C..E.....S......E.PP.Y.DA.
RetrocopyHAFHSCSGNSRLSLNTSRFSLCRVHGSHRTGLWRSRSSSIAERGCQDERCCSYSSQLAVNESPPTYHDAR
ParentalYFPVLIVHRNEGCLNHDHRHLH-RNGSCVETSL
.FPVLIVHR.EG....D.RH...R..SC.ETSL
RetrocopyFFPVLIVHRPEG---QDRRHFYVRRSSCLETSL

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Ficedula albicollis was not studied using RNA-Seq expression data.
Ficedula albicollis was not studied using ChIP-Seq data.
Ficedula albicollis was not studied using EST data.
Ficedula albicollis was not studied using FANTOM5 data.
retro_falb_6 was not experimentally validated.

Retrocopy orthology:
Ficedula albicollis does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species Parental gene accession Retrocopies number
Ficedula albicollis ENSFALG00000011278 1 retrocopy
retro_falb_6 ,



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