>retro_falb_6
ATGTGCCGAGAGTCCCACTGGAAATGCCTCCTCCTCTCCATCCTCATGTATGGCTGCCTGGGTGCAGTGGCCTGGTGTCA
GCTGGCCAGAGTCACCAAGCTCAGCTTCGATAGCTCCTTCAAGGGCAAGTCTATGATCTACCACGACAGCCCGTGTTCGG
ACGGCTACGTTTACATCCCACTGGCCTTCCTCTCCATGCTCTATGTGGTGTACCTGGTGGAGTGCTGGCACTGCCACGTC
AAGAGGGAGCTGCAGTACAAGGCAGACGTGGACAGCGTGTACGAGTGCATCAGCCGCATGCAGCAGGCCACTCCGTGCAT
CTGGTGGAAGGCCATCAGCTACCACTTCGTGCGCAGGACCCGGCAGGTGACGCGCTACCGCAACGGCGACGCCTACACCA
CCACGCAGGTCTACCACGAGCGGGTCAACACCCACGTGGCTGAAGCCGAGTTTGACTACTCCCACTGCGGGTACAAGGAC
ATCTCCAAGGAGCTCCTGGGCTTGGAGAGCTATACAGCCACCAAGCTGAGGTTCACCAAGTGCTTCAGCTTTGCCAACAT
TGAGTCTGAGAACTCTTACCTGACTCAGAGAGCTCATTTCTTCACGGAGATCGAGGGGCTAGATGACTACATGGAGGTGA
GGGAAGGCATGCAGCTCAAAAACGTGGATTTTAAAGAGCTCATGATGGCCTACGGAGACCCGGACCACCTGCCGTGGTAC
GTGTCCCATTATGCCTTCTGGGTGGCAGCCGTCCTGATGGTCTCGTGGCCGCTCAGGGTGCTCATAGAGTACCGGACTGC
TTACGTGCACTACCACGTGGAGAAGCTGCTGGGGCTGGAGTACACGGCGCCCGCCGCGGCCGAGGAGCCCCTGTACCGGT
ACCGCATGCCCCGGGACGCCACGCAGGACAGCACCGAGCTGGAGTGGCACATCTGCACCAACCGGCAGCTGATCCCCAGC
TACTCGGAGGCCGTGCTCATGGACCTGGCCGGCTCCCCGGCCTACAGCAGCTACGCCGCGTGTCGCTACGGCGACGCGGC
CCACGGCTGCGAGCGCTGCCACCGGGCCTCCAGCACCTCCTCCATCTTCTCGCGCCACGCTTTCCACAGCTGCAGCGGCA
ACTCGCGCCTCTCCCTCAACACCAGCCGCTTCTCGCTCTGCCGCGTCCACGGCTCGCACAGGACAGGCCTCTGGCGGAGC
CGCAGCAGCAGCATCGCCGAGCGGGGCTGCCAGGATGAGCGGTGCTGCTCCTACTCCAGCCAGCTGGCTGTCAACGAGAG
CCCCCCGACCTACCACGACGCGCGCTTCTTCCCCGTCCTCATCGTGCACAGGCCGGAGGGGCAGGACAGGCGGCATTTCT
ACGTCAGGCGCTCCTCCTGCCTGGAAACCTCCCTGTGA
ORF - retro_falb_6 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
70.2 % |
Parental protein coverage: |
100. % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | MYGCMGAMTWCHVTKVTRLTFDSAYKGKSMMYHDSPCSNGYVYIPLAFLVMLYVVYLVECWHCYTRNELQ |
| MYGC.GA..WC....VT.L.FDS..KGKSM.YHDSPCS.GYVYIPLAFL.MLYVVYLVECWHC....ELQ |
Retrocopy | MYGCLGAVAWCQLARVTKLSFDSSFKGKSMIYHDSPCSDGYVYIPLAFLSMLYVVYLVECWHCHVKRELQ |
|
Parental | YKVDVESVHERVQRMQQATPCIWWKAISYHYVRRTRQVTRYRNGDAYTTTQVYHERVNTHVAEAEFDYSN |
| YK.DV.SV.E...RMQQATPCIWWKAISYH.VRRTRQVTRYRNGDAYTTTQVYHERVNTHVAEAEFDYS. |
Retrocopy | YKADVDSVYECISRMQQATPCIWWKAISYHFVRRTRQVTRYRNGDAYTTTQVYHERVNTHVAEAEFDYSH |
|
Parental | CGVKDISKDLIDLESYPATRLRFTKCFSFANVESENSYLTQRARFFTENEGLDDYMEAREGMHLKNVDFK |
| CG.KDISK.L..LESY.AT.LRFTKCFSFAN.ESENSYLTQRA.FFTE.EGLDDYME.REGM.LKNVDFK |
Retrocopy | CGYKDISKELLGLESYTATKLRFTKCFSFANIESENSYLTQRAHFFTEIEGLDDYMEVREGMQLKNVDFK |
|
Parental | EYMVAFSDPDNLPWYVSHYVFWVAALLTLSWPLRVLNEYRTSYVHYHVEKLFGFDYVAVTPAEERSFCRR |
| E.M.A..DPD.LPWYVSHY.FWVAA.L..SWPLRVL.EYRT.YVHYHVEKL.G..Y.A...AEE.....R |
Retrocopy | ELMMAYGDPDHLPWYVSHYAFWVAAVLMVSWPLRVLIEYRTAYVHYHVEKLLGLEYTAPAAAEEPLYRYR |
|
Parental | MPRVNTVDSTELEWHIRSNQQLVPSYSEAVLMDLVGLSGCTSYSACRYGGYRQNCERCHRTISSSSIFSR |
| MPR..T.DSTELEWHI..N.QL.PSYSEAVLMDL.G.....SY.ACRYG.....CERCHR..S.SSIFSR |
Retrocopy | MPRDATQDSTELEWHICTNRQLIPSYSEAVLMDLAGSPAYSSYAACRYGDAAHGCERCHRASSTSSIFSR |
|
Parental | SALSICNGSPRIPFSSSRFSLGRLYGSRRSCLWRSRSGSLNEQSCPTEQTRLSSQVTVEEEDPPPYQDAL |
| .A...C.G..R.....SRFSL.R..GS.R..LWRSRS.S..E..C..E.....S......E.PP.Y.DA. |
Retrocopy | HAFHSCSGNSRLSLNTSRFSLCRVHGSHRTGLWRSRSSSIAERGCQDERCCSYSSQLAVNESPPTYHDAR |
|
Parental | YFPVLIVHRNEGCLNHDHRHLH-RNGSCVETSL |
| .FPVLIVHR.EG....D.RH...R..SC.ETSL |
Retrocopy | FFPVLIVHRPEG---QDRRHFYVRRSSCLETSL |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Ficedula albicollis was not studied using RNA-Seq expression data.
Ficedula albicollis was not studied using ChIP-Seq data.
Ficedula albicollis was not studied using EST data.
Ficedula albicollis was not studied using FANTOM5 data.
retro_falb_6 was not experimentally validated.
Retrocopy orthology:
Ficedula albicollis does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.