RetrogeneDB ID: | retro_fcat_1157 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C1:213344863..213345526(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SMAP1 | ||
Ensembl ID: | ENSFCAG00000007247 | ||
Aliases: | None | ||
Description: | small ArfGAP 1 [Source:HGNC Symbol;Acc:19651] |
Percent Identity: | 74.44 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MISNPLPATVI-PTAQGTPSIPAAATLSTVISGDLDLFTEQATKSEEVAKKQLSKDSILSLYGTGTIQQQ |
M.SNPLP.TV..P.A.GT.SIPAAATLST.ISG.LDLFT.QATKSEEV.KKQ.SK.SI.SL.GTGT..Q. | |
Retrocopy | MTSNPLPPTVY>PPAPGTSSIPAAATLSTLISGVLDLFTQQATKSEEVGKKQRSKGSIFSLCGTGTVRQK |
Parental | STPGVFMGPTNIPFTSQAPTAFQGFPPMGVPVPAPAAPGLLGNVMGQSTSMMVGMPMPNGFMGNAQTGVM |
STPGV.MG.T..PF.S.AP..FQGFP.MG.PVP.PAAPGLLGNVMGQS.S.MVGMP.P...MGN..TGVM | |
Retrocopy | STPGVLMGRTIMPFASRAPSVFQGFPSMGTPVPPPAAPGLLGNVMGQSASLMVGMPRPSRSMGNT*TGVM |
Parental | PLPPNVVGPHGGMVGQMGAPQSKFGLPQAQQPQWNLSQMNQQMAGMSISSTNPAVGFGQP-PSTTAGWSG |
.LP.NVVGP.GG.VGQ.GAP....GLPQAQ.PQ.NLSQMNQQMAG..ISSTNPA.GFGQP.P.TTA.W.G | |
Retrocopy | SLPSNVVGPQGGTVGQRGAPSGELGLPQAQRPQQNLSQMNQQMAGTGISSTNPAMGFGQP<PNTTAVWPG |
Parental | SSSGQTLSTQLWK |
SSS.QTL.TQLWK | |
Retrocopy | SSSVQTLGTQLWK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 31 .91 RPM |
SRP017611_kidney | 0 .00 RPM | 11 .23 RPM |
SRP017611_liver | 0 .00 RPM | 6 .77 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Echinops telfairi | ENSETEG00000001865 | 1 retrocopy | |
Felis catus | ENSFCAG00000007247 | 1 retrocopy |
retro_fcat_1157 ,
|
Loxodonta africana | ENSLAFG00000007948 | 1 retrocopy | |
Mus musculus | ENSMUSG00000026155 | 1 retrocopy |