RetrogeneDB ID: | retro_fcat_1409 | ||
Retrocopy location | Organism: | Cat (Felis catus) | |
| Coordinates: | D1:75240674..75241229(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | GLIPR1L1 | ||
| Ensembl ID: | ENSFCAG00000015054 | ||
| Aliases: | None | ||
| Description: | GLI pathogenesis-related 1 like 1 [Source:HGNC Symbol;Acc:28392] |
Retrocopy-Parental alignment summary:
>retro_fcat_1409
ATGACTTGGGATGATGGTTTAGCGCAGGATGCTAAAGCATGGGCAAACAAGTGCAAGTTCAAACACAACTCCTGTTTATC
AAAATCCTATGGATGTCATCCGACTTTTCAATATGTTGGAGAAAATATCTGGCTAGGTGGATTCAGCATATTTTCACCAA
GATTGGCTGTTATTGCTTGGTTTAATGAAACTGCATTTTATGATTATAATGCCCTATCATGTTCCAAAGTTTGTGGCCAT
TACACACAGGTAGTTTGGGCCAATTCATATAAAGTCGGTTGTGCAATTACAGTGTGTCCTACACTTGGGAACCATGAAAC
TGCCATATATGTATGCAACTATGGACCTGCAGGAAATTTTCCAAATAGGCCCCCTTACACTAAAGGAGTATCCTGCTCTT
TGTGTGCAAAAGAAGAAACCTGCGAAAACAAGCTCTGCCGTAATAAAGAACTTGATAAGCCTGAAAAATATCCAAATTGG
AGTCCACAAGGGAAGGCACCTCAGCAGATATCATGTAATTCATTGTGCCTAGTTTCTGTTCTTCTGAGACTATTT
ORF - retro_fcat_1409 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 98.92 % |
| Parental protein coverage: | 76.13 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | MTWDDGLAQVAKAWANKCKFKHNSCLSKSYGCHPTFQYVGENIWLGGFSIFSPRLAVIAWFNETAFYDYN |
| MTWDDGLAQ.AKAWANKCKFKHNSCLSKSYGCHPTFQYVGENIWLGGFSIFSPRLAVIAWFNETAFYDYN | |
| Retrocopy | MTWDDGLAQDAKAWANKCKFKHNSCLSKSYGCHPTFQYVGENIWLGGFSIFSPRLAVIAWFNETAFYDYN |
| Parental | ALSCSKVCGHYTQVVWANSYKVGCAITMCPTLGNHETAIYVCNYGPAGNFPNRPPYTKGVSCSLCAKEET |
| ALSCSKVCGHYTQVVWANSYKVGCAIT.CPTLGNHETAIYVCNYGPAGNFPNRPPYTKGVSCSLCAKEET | |
| Retrocopy | ALSCSKVCGHYTQVVWANSYKVGCAITVCPTLGNHETAIYVCNYGPAGNFPNRPPYTKGVSCSLCAKEET |
| Parental | CENKLCRNKELDKPEKYPNWSPQGKAPQQISCNSLCLVSVLLRLF |
| CENKLCRNKELDKPEKYPNWSPQGKAPQQISCNSLCLVSVLLRLF | |
| Retrocopy | CENKLCRNKELDKPEKYPNWSPQGKAPQQISCNSLCLVSVLLRLF |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP017611_brain | 0 .00 RPM | 0 .00 RPM |
| SRP017611_kidney | 0 .10 RPM | 0 .41 RPM |
| SRP017611_liver | 0 .00 RPM | 0 .00 RPM |
Felis catus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_fcat_1409 retrocopy.
Felis catus was not studied using FANTOM5 data.
retro_fcat_1409 was not experimentally validated.
Retrocopy orthology:
Felis catus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Felis catus | ENSFCAG00000015054 | 1 retrocopy |
retro_fcat_1409 ,
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