RetrogeneDB ID: retro_fcat_1666

Retrocopy location

• Organism: Cat (Felis catus)
• Coordinates: E1:23133345..23133654(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: LZIC
• Ensembl ID: ENSFCAG00000023559
• Aliases: None
• Description: leucine zipper and CTNNBIP1 domain containing [Source:HGNC Symbol;Acc:17497]

Sequence

>retro_fcat_1666
GAACCAGGGCCCCTTCAGACAAGGTGAGCAGGGATGGATGGAGATCTCATGGCAGGAAAGTTGGAAAGAGGCCTGTACAC
TCAAGACAAAGTGGAGATACTAGCAGCTCTCAGGAAACTTAGGGAGAAGCTGACTGCAGATGATGAGGCTTCTTGTCAGC
ACATGCAGGTGCTACACTCAGCCAGTTTGAGAAAGTCTCTACAGACCTTGGCTTTGGAGACAAAGTTCTTGCATTGGCAA
GCTCTGAGTTTGAAAAAACAAAAACATGACATGGTGTGGAACCTTGGGACATTGATCACATTCTTGTTA

Alignment

ORF - retro_fcat_1666 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 81.9 %
• Parental protein coverage: 50.49 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  QPGQLRTRLAEMDRDLMVGKLERGLYTQQKVEILTALRKLGEKLTADDEA-FLSANAGAILSQFEKVSTD
          .PG.L.TR.A.MD.DLM.GKLERGLYTQ.KVEIL.ALRKL.EKLTADDEA.FLSA.AGA.LSQFEKVSTD
Retrocopy EPGPLQTR*AGMDGDLMAGKLERGLYTQDKVEILAALRKLREKLTADDEA<FLSAHAGATLSQFEKVSTD

Parental  LGSGDKVLALASFEVEKT-KNDMVWKLGTLITFLL
          LG.GDKVLALAS.E.EKT.K.DMVW.LGTLITFLL
Retrocopy LGFGDKVLALASSEFEKT>KHDMVWNLGTLITFLL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP017611_brain	0.00 RPM	47.40 RPM
SRP017611_kidney	0.00 RPM	67.40 RPM
SRP017611_liver	0.00 RPM	34.98 RPM

ChIP-Seq

Felis catus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_fcat_1666 retrocopy.

TSS

Felis catus was not studied using FANTOM5 data.

Lab

retro_fcat_1666 was not experimentally validated.

Homology

Retrocopy orthology:

Felis catus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000004171	2 retrocopies	retro_amel_1330, retro_amel_1820,
Echinops telfairi	ENSETEG00000011633	1 retrocopy	retro_etel_686,
Felis catus	ENSFCAG00000023559	1 retrocopy	retro_fcat_1666 ,
Mustela putorius furo	ENSMPUG00000016545	2 retrocopies	retro_mputfur_336, retro_mputfur_524,