RetrogeneDB ID: | retro_fcat_277 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A1:164571978..164572496(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SURF2 | ||
Ensembl ID: | ENSFCAG00000028927 | ||
Aliases: | None | ||
Description: | surfeit 2 [Source:HGNC Symbol;Acc:11475] |
Percent Identity: | 68.97 % |
Parental protein coverage: | 67.32 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | RLTLRHINK-VPEHVLRHTQGQRYQRALREYERCQKQGTEYVAACLLHRRRRKEDQVDGAGPPRRGEAFW |
RLTL.HINK.VPEHVLRH.QGQRYQRALREYE.CQKQG.E.V.ACLLH.RR..EDQ.D...PPR..EAFW | |
Retrocopy | RLTLWHINK<VPEHVLRHPQGQRYQRALREYEECQKQGVECVSACLLHKRRPREDQTDSSRPPRLREAFW |
Parental | EPSSGEDGAAASDSDDSMTDLYPPEVFTRKDPGGTEHGDGTEDFLTEGEDERPRGLTETGPGGGEETRGD |
EP.S..D.A..SDSDDSMTDL.PPE.FTRKD.GG.EHGD.T.DFLT..ED..P...TE.GPG..EE...D | |
Retrocopy | EPASSNDNATVSDSDDSMTDL*PPELFTRKDLGGNEHGDSTNDFLTKEEDKKP*HPTEKGPGDREEMEMD |
Parental | QEPVLKRRKRQLGSAKKFRRHPRKPKSFSNFKQS |
...VLK..KR.LGS.KKF..H.R.PKS.S.FKQS | |
Retrocopy | *KLVLKHGKR*LGSLKKFKSHHRTPKSSSSFKQS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 19 .40 RPM |
SRP017611_kidney | 0 .00 RPM | 58 .74 RPM |
SRP017611_liver | 0 .00 RPM | 101 .49 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000019763 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000009532 | 5 retrocopies | |
Felis catus | ENSFCAG00000028927 | 1 retrocopy |
retro_fcat_277 ,
|
Monodelphis domestica | ENSMODG00000012766 | 1 retrocopy |