RetrogeneDB ID: retro_gacu_5

Retrocopy location

• Organism: Stickleback (Gasterosteus aculeatus)
• Coordinates: groupIV:5767957..5769001(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSGACG00000017178
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: P2RY2 (2 of 2)
• Ensembl ID: ENSGACG00000008233
• Aliases: None
• Description: purinergic receptor P2Y, G-protein coupled, 2 [Source:HGNC Symbol;Acc:8541]

Sequence

>retro_gacu_5
TCAGCGAGAAGTAGCATCACCATGGAGACGGTCATCAGCAGCCCCGCTGAGCGGAACCAATCGACGCCGTTCGTCACCAT
CTTCAACTCTAGCTGCCGCTTTGACGAGGAGTTCAAATACATCCTGCTGCCCGTGTCCTACAGCCTGGTGTTTGTGGTCG
GCCTGGTGCTCAACGCTGCGGCTCTGGGGTTGTTCCTGAAGATGCGTCCGTGGAACCCCAGCACAGTGTTCATGTTCCAT
CTGGCCCTGTCCGACTTCCTGTACGTGCTCTCCCTCCCCACCCTCATCTACTACTACGCCAACCGCAGCGACTGGCCTTT
CGGATTGGCCGCTTGCAAAATCGTGCGCTTCCTCTTCTACGCCAACCTCTACTGCAGCATCCTCTTCCTCACCTGCATCA
GCGTGCACCGCTATCTGGGCATCTGCCACCCAATCAAGACGCTGACCACCGTGAAGTCCCGCCATGCCCACCTGGTGTGC
GGCACGGTGTGGGCTGTGGTGAGCGTGTGCCTGGTGCCCAACCTCATCTTCGTCACCACCTCCAGGAGGGAGAATGACAC
CCTGTGCCACGACACAACCAGCCAGGAGGCCTTCGAGGAGTATGTGGACTACAGCTCCGTCGTCATGGTGCTCCTGTTTG
TAATCCCTTTCCTGGTCATTGTGGCGTGCTACTGCTTGATGGCGCGCACCCTGTGCCAACCCAGACGCGGGTTACCTGCC
GGCCGCCAGGGCGCCGCCTCCCACCAGAAGTCCATCAAGCTCATCGTGGTGGTGCTGGTGGTGTTCGCGTTGAGCTTCGT
CCCGTTCCACGTCACGCGGACGCTCTACTACACCGCCCGCGTGTTAGGCCGTAACTGTGAATACCTCAACATCGTCAACT
TTACGTACAAGATCACCAGGCCGCTGGCGAGCATCAACAGCTGTATCGACCCCATCCTTTATTTCCTGGCCGGGGATCAC
TACCGGTCCAGAATGATGTCCGTCCTGACGGGAGGAAGGCCGAAGACAAGCGTCCAGGCACGAGAACAGGAACAAACCCG
GCTG

Alignment

ORF - retro_gacu_5 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 51.92 %
• Parental protein coverage: 95.4 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  NNVTSQTNYSNFYCRFEERFKYILLPVSYSLVFVIGLALNATALYVMLFRTKRWKSSTIYMFNLTVCDTL
          N..T......N..CRF.E.FKYILLPVSYSLVFV.GL.LNA.AL...L.....W..ST..MF.L...D.L
Retrocopy NQSTPFVTIFNSSCRFDEEFKYILLPVSYSLVFVVGLVLNAAALGLFL-KMRPWNPSTVFMFHLALSDFL

Parental  YVLTLPFLIYYYADENDWPFSEPLCKIIRFLFYTNLYGSIMFLCCISLHRFIGVCYPVRSLSWVSARRAK
          YVL.LP.LIYYYA...DWPF....CKI.RFLFY.NLY.SI.FL.CIS.HR..G.C.P...L..V..R.A.
Retrocopy YVLSLPTLIYYYANRSDWPFGLAACKIVRFLFYANLYCSILFLTCISVHRYLGICHPIKTLTTVKSRHAH

Parental  LVSVAVWACVLLCQAPILYFSRTSKSESVRICYDTTSPDLFDDFLLYSSAVSVLMFALPFMVVMVCYGLM
          LV...VWA.V..C..P.L.F..TS..E....C.DTTS...F.....YSS.V.VL.F..PF.V...CY.LM
Retrocopy LVCGTVWAVVSVCLVPNLIFVTTSRRENDTLCHDTTSQEAFEEYVDYSSVVMVLLFVIPFLVIVACYCLM

Parental  VRKLLEPGWASEGGERGGLSARRLKQKSVKMIIVVLATFMICFLPFHLTRSLYYSFRYL-RQVDPSQASS
          .R.L..P......G..G..S.....QKS.K.I.VVL..F...F.PFH.TR.LYY..R.L.R.........
Retrocopy ARTLCQPRRGLPAGRQGAAS----HQKSIKLIVVVLVVFALSFVPFHVTRTLYYTARVLGRNCEYLNIVN

Parental  VAYKVTRPLASTNSCVDPILYFLAGQNVRSSL
          ..YK.TRPLAS.NSC.DPILYFLAG...RS..
Retrocopy FTYKITRPLASINSCIDPILYFLAGDHYRSRM

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Gasterosteus aculeatus was not studied using RNA-Seq expression data.

ChIP-Seq

Gasterosteus aculeatus was not studied using ChIP-Seq data.

EST

Gasterosteus aculeatus was not studied using EST data.

TSS

Gasterosteus aculeatus was not studied using FANTOM5 data.

Lab

retro_gacu_5 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_gacu_5 has 0 orthologous retrocopies within teleost group .

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Gasterosteus aculeatus	ENSGACG00000008233	1 retrocopy	retro_gacu_5 ,