RetrogeneDB ID: retro_ggor_1214

Retrocopy location

• Organism: Gorilla (Gorilla gorilla)
• Coordinates: 15:65019141..65020441(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSGGOG00000023734
• Aliases: None
• Description: None

Sequence

>retro_ggor_1214
TGTCAGCGGCCCCTGGACACACTGGGCCCTGAAGGCTCAGGCAGCGGCTCCTCCAGCCACGAGCTCTTCAACGAGGCTGA
CTTCATCCCGCGCCACCTGGCCCCACGCCCTTCACCCGCCTCATCACCCAAGCCAGGCACCATGGGCAACGCCATTGAGG
AGGAGGCTCCAGAGCTGGACCTGCCGGGGCCCGTGTTTGTGGACGACTTCTACTACGACTACAATTTCATCAGCTTCCAC
GAGGATCTGTCCTACAGGCCCTCTGAGGAGCCCAATCTAGAGCTGGCGGGGACAGGGGATCGGACGCCCCCACCACACAG
CCGTCCTGCTGCGCCCTCCACGGGTAGCCCCGTGCCTGCCACAGAGCCTCCTGCAGCCAAGGAGGAAGGGGCAACGGGAC
CTTGGTCCCCGAGCCCTTGGCCTAGCCAGGCCGGCCGCTCCCCACCCCCACCCTCAGAGCAGACCCCTGGGAACCCTTTG
ATCAATTTCCTGCCTGAGGAAGACGCCCCCATAGGGGCCCCAGATCTTGGGCTCCCCAGCCTGCCCTGGCCCAGGGTTTC
CACTGATGGCCTGCAGACGCCTGCCGCCCCTGAGAGCCAAAATGATTTCCCAGTTGGCAAGGACAGCCAGAGCCAGCTGC
CCTCTCCATGGCAGGACAGGACCAATGAGGTTTTCAAATGATGAGGAACCCGAGGGCTGCGGAGCACCCCACCTGCCCCC
GAGACCCAGCCCCACGCTGCCCACTTTGTACCCGGTCAGCAGCACCCACTCCTCTCCTAGTCCTGACGTGGCGGAGCTGT
GGACAGGAGGGACAGTAGCCTGGGAGTCAGCTCTGGAGGGTGGCCTGGGGCCTGTGGATAGTGAACTGTGGCCCACTGTT
GGGGTGGCTTCTCTCCCTCCTCCTCCCATAGCCCCTCTGCCAGAGATGAAGGGCAAGGACAGTCCCCTGGAGCCGGGGAC
TCCCACCTTCCCAACCCCAGGACCAGGCTTATGGGACCTTCAGACTGTGGCAGCGTGGGGGACCTTCCTCCCCACAACCC
TGACTGGCCTCGGGCACACGCCTGAGCCTGCCCTGAACCCAGGACCCAAGGGTCAGCCTGAGTCCCTCAGCCCTGAGGTG
CCCCTGAGCTCTAGGCTGCTGTCCATGCCAGCTTGGGACAGCCCCGCCAACAGCCACAGAGTCCCTGAGACCCAGCCGCT
GGCTCCCAGCCTGGCTGAAGCGGGGCCCCCCGCGGACCCGTTGGTTGTCAGGAATGCCAGCTGACAAGTGGGAAACTGCA
GCGAGGCAAGTGGCGTGGGC

Alignment

ORF - retro_ggor_1214 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 96.36 %
• Parental protein coverage: 59.67 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  CRWPLDTLGPEGSGSGSGSSSHELFNEADFIPRHLAPRPSPASSPKPGTMGNAIEEEAPELDLPGPVFVD
          C..PLDTLGPE..GSGSGSSSHELFNEADFIPRHLAPRPSPASSPKPGTMGNAIEEEAPELDLPGPVFVD
Retrocopy CQRPLDTLGPE--GSGSGSSSHELFNEADFIPRHLAPRPSPASSPKPGTMGNAIEEEAPELDLPGPVFVD

Parental  DFYYDYNFISFHEDLSYRPSEEPNLELAGTGDRTPPPHSRPAAPSTGSPVPATEPPAAKEEGATGPWSPS
          DFYYDYNFISFHEDLSYRPSEEPNLELAGTGDRTPPPHSRPAAPSTGSPVPATEPPAAKEEGATGPWSPS
Retrocopy DFYYDYNFISFHEDLSYRPSEEPNLELAGTGDRTPPPHSRPAAPSTGSPVPATEPPAAKEEGATGPWSPS

Parental  PWPSQAGRSPPPPSEQTPGNPLINFLPEEDAPIGAPDLGLPSLPWPRVSTDGLQTPAAPESQNDFPVGKD
          PWPSQAGRSPPPPSEQTPGNPLINFLPEEDAPIGAPDLGLPSLPWPRVSTDGLQTPAAPESQNDFPVGKD
Retrocopy PWPSQAGRSPPPPSEQTPGNPLINFLPEEDAPIGAPDLGLPSLPWPRVSTDGLQTPAAPESQNDFPVGKD

Parental  SQSQLPSPWQDRTNEVFK-DEEPEGCGAPHLPPRPSPTLPTLYPVSSTHSSPSPDVAELWTGGTVAWESA
          SQSQLPSPWQDRTNEVFK.DEEPEGCGAPHLPPRPSPTLPTLYPVSSTHSSPSPDVAELWTGGTVAWESA
Retrocopy SQSQLPSPWQDRTNEVFK>DEEPEGCGAPHLPPRPSPTLPTLYPVSSTHSSPSPDVAELWTGGTVAWESA

Parental  LEGGLGPVDSELWPTVGVASLPPPPIAPLPEMKGKDSPLEPGTPTFPTPGPGLWDLQTVAAWGTFLPTTL
          LEGGLGPVDSELWPTVGVASLPPPPIAPLPEMKGKDSPLEPGTPTFPTPGPGLWDLQTVAAWGTFLPTTL
Retrocopy LEGGLGPVDSELWPTVGVASLPPPPIAPLPEMKGKDSPLEPGTPTFPTPGPGLWDLQTVAAWGTFLPTTL

Parental  TGLGHTPEPALNPGPKGQPESLSPEVPLSSRLLSMPAWDSPANSHRVPETQPLAPSLAEAGPPADPLVVR
          TGLGHTPEPALNPGPKGQPESLSPEVPLSSRLLSMPAWDSPANSHRVPETQPLAPSLAEAGPPADPLVVR
Retrocopy TGLGHTPEPALNPGPKGQPESLSPEVPLSSRLLSMPAWDSPANSHRVPETQPLAPSLAEAGPPADPLVVR

Parental  NASWTAGCWGDCSTTCGLG
          NAS...G....CS...G.G
Retrocopy NAS*QVG---NCSEASGVG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain_prefrontal_cortex	0.00 RPM	0.48 RPM
SRP007412_cerebellum	0.00 RPM	0.24 RPM
SRP007412_heart	0.00 RPM	1.44 RPM
SRP007412_kidney	0.00 RPM	4.91 RPM
SRP007412_liver	0.00 RPM	0.16 RPM
SRP007412_testis	0.00 RPM	0.73 RPM

ChIP-Seq

Gorilla gorilla was not studied using ChIP-Seq data.

EST

Gorilla gorilla was not studied using EST data.

TSS

Gorilla gorilla was not studied using FANTOM5 data.

Lab

retro_ggor_1214 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_ggor_1214 has 0 orthologous retrocopies within eutheria group .

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Gorilla gorilla	ENSGGOG00000023734	1 retrocopy	retro_ggor_1214 ,