RetrogeneDB ID: | retro_ggor_1605 | ||
Retrocopy location | Organism: | Gorilla (Gorilla gorilla) | |
| Coordinates: | 22:3200481..3200748(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | ENSGGOG00000025403 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_ggor_1605
ACATGGGTCCTGGTGTCCACCTGGAGCCTGATGTTCCCCAGGGGCCTGGGTATCCACTTGGGTCCCGAAGTTCATCTAAG
ACCTAGTGTTCACCTAGGGCCTGATAGTCACCTGGGGACTGGGTATGTACCTGGGGCCTCATGTCCACCTGTGGTGTAGA
TATCTATGTGGGGGCTGTGTGCCAACTTGGTGCCTGATGTCCACCAATGGATCCAGTAAACCCACCTGGGGCTTGGTGTT
TACCTGGAACCTGATGTCCAGCTGGGG
ORF - retro_ggor_1605 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 50.55 % |
| Parental protein coverage: | 58.28 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 2 |
Retrocopy - Parental Gene Alignment:
| Parental | SWVLVSSWGLIFTWGLGIHLITGIHQGTSVQLGPDVHLGP-GVNLDRGVNLGPGYLPGAWIFIVDLVSTQ |
| .WVLVS.W.L.F..GLGIHL....H...SV.LGPD.HLG..G..L...V.L...YL.G.......L.ST. | |
| Retrocopy | TWVLVSTWSLMFPRGLGIHLGPEVHLRPSVHLGPDSHLGT>GMYLGPHVHLWCRYLCGGCVPTWCLMSTN |
| Parental | GLMS-TLGL-GIYLGPDVDLG |
| G....T.GL.G.YL.PDV.LG | |
| Retrocopy | GSSKPTWGL<GVYLEPDVQLG |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 0 .62 RPM |
| SRP007412_cerebellum | 0 .00 RPM | 1 .22 RPM |
| SRP007412_heart | 0 .00 RPM | 0 .16 RPM |
| SRP007412_kidney | 0 .00 RPM | 0 .04 RPM |
| SRP007412_liver | 0 .00 RPM | 0 .03 RPM |
| SRP007412_testis | 0 .00 RPM | 0 .31 RPM |
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_1605 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ggor_1605 has 0 orthologous retrocopies within eutheria group .Parental genes homology:
Parental genes homology involve 2 parental genes, and 3 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Gorilla gorilla | ENSGGOG00000025403 | 2 retrocopies |
retro_ggor_1605 , retro_ggor_78,
|
| Pongo abelii | ENSPPYG00000020009 | 1 retrocopy |