RetrogeneDB ID: | retro_ggor_1886 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 3:132498875..132499414(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSGGOG00000007747 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NIP7 | ||
Ensembl ID: | ENSGGOG00000022785 | ||
Aliases: | None | ||
Description: | 60S ribosome subunit biogenesis protein NIP7 homolog [Source:UniProtKB/TrEMBL;Acc:G3RX93] |
Percent Identity: | 86.74 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MRPLTEEETRVMFEKIAKYIGENLQLLVDRPDGTYCFRLHNDRVYYVSEKIMKLAANISGDKLVSLGTCF |
MRPLTEEETRVMFEKI.KYI.ENLQLL.DRPD.TYCF.L.NDRV.YVSEKI.KL.A.IS.DKLVSLGTCF | |
Retrocopy | MRPLTEEETRVMFEKIVKYIRENLQLLLDRPDRTYCFWLYNDRVDYVSEKIVKLDASISRDKLVSLGTCF |
Parental | GKFTKTHKFR-LHVTALDYLAPYAKYKVWIKPGAEQSFLYGNHVLKSGLGRITENTSQYQGVVVYSMADI |
GK.TKTHKFR..H.TAL.YLAPYAKYKVWIK.GAEQSFLYGNHVLK..LGRITEN.SQYQGVVVYSMADI | |
Retrocopy | GKVTKTHKFR<VHITALNYLAPYAKYKVWIKRGAEQSFLYGNHVLKYSLGRITENSSQYQGVVVYSMADI |
Parental | PLGFGVAAKSTQDCRKVDPMAIVVFHQADIGEYVRHEETLT |
PLGFGVAAKSTQDCRKVDPMAIVV.HQADIGEY..HEE.LT | |
Retrocopy | PLGFGVAAKSTQDCRKVDPMAIVVLHQADIGEYAQHEEMLT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 10 .69 RPM |
SRP007412_cerebellum | 0 .00 RPM | 4 .73 RPM |
SRP007412_heart | 0 .00 RPM | 1 .94 RPM |
SRP007412_kidney | 0 .00 RPM | 13 .13 RPM |
SRP007412_liver | 0 .00 RPM | 7 .52 RPM |
SRP007412_testis | 0 .00 RPM | 25 .59 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2707 |
Pan troglodytes | retro_ptro_1828 |
Pongo abelii | retro_pabe_2258 |