RetrogeneDB ID: retro_ggor_3064

Retrocopy location

• Organism: Gorilla (Gorilla gorilla)
• Coordinates: X:133205250..133205962(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ETS2
• Ensembl ID: ENSGGOG00000015464
• Aliases: None
• Description: None

Sequence

>retro_ggor_3064
GAGCAAACACTGTAAAAAGTGCCAACAGGCTTGGATTCAATTTCTCATGACTTGCCAACTGTGCATGGCCCTTGTTAACG
CTGTATAGCAAGGCTGTGATGAATCAAGCTTTAAAAGCTATCTTCAGTGGCTTCAAAAAGGAGAAATAGTGCTTTGGCTT
TCCAAAGAAACCCTGGCTGTGGAGGGAGCAGTAAGTATGCCAGGGGCTTCTCTGCACTACCAACAAGTTCAGTCTGGTGA
ACGTGAATCTCCAGAGGCTTAGCATGAGTGGCCAGGTATTGTATAACCTTGGCAAGGAGTACTTTCTGGAGCTGGTACTT
GACTTTGTGGATGACATTTTCTGGGAACATCTGGACCAGATGACCGAAGAAAGCCAAGAAAAGACAAAAGATCAATGTAA
AGAAAATTCATGCCTGAACTCAATTCCTTATTGGTTTAACAGCAATACATTAGGTTTTGGCATAAAGCAGGTACCCTATG
GTATGCAAACACACAATTACCCCAAAGGCAGCCTCCTGGACAGCATGTGTCCAGCTTCTGCACCCAGCGTGCTCAGCTCT
GAATAGGAGTTTCAGATGTTCTCCAAGTCTCAGCTCAGCTCTATCAGCCTCAACTATGCTCCATCAGTCAGGACTTTCTA
GGCAACTTGAATTTGCTCACCAACAATTCTGGGAAGCCTACAGACCACAAATCCCCTGAGAATGGTGCAGAC

Alignment

ORF - retro_ggor_3064 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 74.27 %
• Parental protein coverage: 50.96 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  EQTLQEVPTGLDSISHDS-ANCELPLLTPCSKAVMSQALKATFSGFKKEQRRLGIPKNPWLWSEQQVCQW
          EQTL..VPTGLDSISHD..ANC..PLLT..SKAVM.QALKA.FSGFKKE....G.PK.PWLW.EQ.VCQ.
Retrocopy EQTL*KVPTGLDSISHDL<ANCAWPLLTLYSKAVMNQALKAIFSGFKKEK*CFGFPKKPWLWREQ*VCQG

Parental  LLWATNEFSLVNVNLQRFGMNGQMLCNLGKERFLELAPDFVGDILWEHLEQMIKENQEKTEDQYEENSHL
          LL..TN.FSLVNVNLQR..M.GQ.L.NLGKE.FLEL..DFV.DI.WEHL.QM..E.QEKT.DQ..ENS.L
Retrocopy LLCTTNKFSLVNVNLQRLSMSGQVLYNLGKEYFLELVLDFVDDIFWEHLDQMTEESQEKTKDQCKENSCL

Parental  TSIPHWINSNTLGFGTEQAPYGMQTQNYPKGGLLDSMCPASTPSVLSSEQEFQMFPKSRLSSVSVTY-CS
          .SIP.W.NSNTLGFG..Q.PYGMQT.NYPKG.LLDSMCPAS.PSVLSSE.EFQMF.KS.LSS.S..Y.CS
Retrocopy NSIPYWFNSNTLGFGIKQVPYGMQTHNYPKGSLLDSMCPASAPSVLSSE*EFQMFSKSQLSSISLNY<CS

Parental  VSQDFPGSNLNLLTNNSGTPKDHDSPENGAD
          .SQDF.G.NLNLLTNNSG.P.DH.SPENGAD
Retrocopy ISQDFLG-NLNLLTNNSGKPTDHKSPENGAD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain_prefrontal_cortex	0.00 RPM	123.00 RPM
SRP007412_cerebellum	0.00 RPM	34.12 RPM
SRP007412_heart	0.00 RPM	33.36 RPM
SRP007412_kidney	0.00 RPM	63.38 RPM
SRP007412_liver	0.00 RPM	216.56 RPM
SRP007412_testis	0.00 RPM	21.24 RPM

ChIP-Seq

Gorilla gorilla was not studied using ChIP-Seq data.

EST

Gorilla gorilla was not studied using EST data.

TSS

Gorilla gorilla was not studied using FANTOM5 data.

Lab

retro_ggor_3064 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_ggor_3064 has 0 orthologous retrocopies within eutheria group .

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000008102	1 retrocopy	retro_cjac_4220,
Gorilla gorilla	ENSGGOG00000008714	1 retrocopy	retro_ggor_1126,
Gorilla gorilla	ENSGGOG00000015464	1 retrocopy	retro_ggor_3064 ,