RetrogeneDB ID: retro_ggor_3081

Retrocopy location

• Organism: Gorilla (Gorilla gorilla)
• Coordinates: unplaced:15519951..15520710(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: TXNRD2
• Ensembl ID: ENSGGOG00000001980
• Aliases: None
• Description: None

Sequence

>retro_ggor_3081
GATTATGATTATGTTGTAATAGGAGGAGGTTCAGGTGGAATGGCTTCAGCCAAAGAAGCTGCAGCACATGGTGCTCGAGT
TTTATTGTTTGATTATGTAAAGCCAAGTAGTCAAGGAACAAAATGGGGTATAGGTGGAACGTGTGTGAACGTAGGATGTG
TACCAAAAAAATTAATGCACTATGCAGGTCATATGGGGAGTATATTTAAATTAGATTCGAAAGCATATGGATGGAAATTT
GACAATTTAAAACATGACTGGAAGAAATTAGTTACAACTGTACAATCTCACATACGTTCATTAAATTTTAGTTATATGAC
TGGTTTGAGATCATCAAAGGTTAAATATATTAATGGGTTAGCCAAGTTAAAAGACAAAAATACAGTATCTTATTATTTAA
AAGGAGATTTATCGAAAGAAGAAACTGTTACAGGAAAATATATTTTAATAGCAACAGGATGTAGACCACATATACCAGAT
GATGTTGAAGGTGCTAAAGAATTAAGTATTACATCTGATGATATTTTTTCATTAAAAAAAGATCCAGGAAAAACATTAGT
AGTTGGAGCATCATATGTAGCCTTAGAGTGTTCTGGTTTTCTTAATTCATTAGGATATGACGTAACAGTAGCTGTGCGTT
CAATAGTCTTAAGAGGTTTTGATCAACAATGTGCCGTTAAAGTAAAACTTTATATGGAAGAACAAGGAGTTATGTTTAAG
AATGGAATTTTGCCAAAAAAATTAACAAAAATGGATGAT

Alignment

ORF - retro_ggor_3081 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 52.36 %
• Parental protein coverage: 69.34 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  DYDLLVVGGGSGGLACAKEAAQLGRKVAVVDYVEPSPQGTRWGLGGTCVNVGCIPKKLMHQAALLGGLIQ
          DYD..V.GGGSGG.A.AKEAA..G..V...DYV.PS.QGT.WG.GGTCVNVGC.PKKLMH.A...G....
Retrocopy DYDYVVIGGGSGGMASAKEAAAHGARVLLFDYVKPSSQGTKWGIGGTCVNVGCVPKKLMHYAGHMGSIFK

Parental  -DAPNYGWEVAQPVPHDWRKMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVDEHTVCGVAKG--GK
          .D...YGW.......HDW.K....VQ.H..SLN......L...KVKY.N..A...D..TV....KG...K
Retrocopy LDSKAYGWKFDN-LKHDWKKLVTTVQSHIRSLNFSYMTGLRSSKVKYINGLAKLKDKNTVSYYLKGDLSK

Parental  EILLSADHIIIATGGRPRYPTHIEGALEYGITSDDIFWLKESPGKTLVVGASYVALECAGFLTGIGLDTT
          E.......I.IATG.RP..P...EGA.E..ITSDDIF.LK..PGKTLVVGASYVALEC.GFL...G.D.T
Retrocopy EETVTGKYILIATGCRPHIPDDVEGAKELSITSDDIFSLKKDPGKTLVVGASYVALECSGFLNSLGYDVT

Parental  IMMRSIPLRGFDQQMSSMVIEHMASHGTRFLRGCAPSRVRRLPD
          ...RSI.LRGFDQQ....V...M...G..F..G..P.......D
Retrocopy VAVRSIVLRGFDQQCAVKVKLYMEEQGVMFKNGILPKKLTKMDD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain_prefrontal_cortex	0.00 RPM	11.84 RPM
SRP007412_cerebellum	0.00 RPM	15.44 RPM
SRP007412_heart	0.00 RPM	8.94 RPM
SRP007412_kidney	0.00 RPM	14.60 RPM
SRP007412_liver	0.00 RPM	10.05 RPM
SRP007412_testis	0.00 RPM	8.91 RPM

ChIP-Seq

Gorilla gorilla was not studied using ChIP-Seq data.

EST

Gorilla gorilla was not studied using EST data.

TSS

Gorilla gorilla was not studied using FANTOM5 data.

Lab

retro_ggor_3081 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_ggor_3081 has 0 orthologous retrocopies within eutheria group .

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Gorilla gorilla	ENSGGOG00000001980	1 retrocopy	retro_ggor_3081 ,
Drosophila melanogaster	FBgn0020653	1 retrocopy	retro_dmel_58,