RetrogeneDB ID: retro_ggor_744

Retrocopy location

• Organism: Gorilla (Gorilla gorilla)
• Coordinates: 11:105401757..105402351(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: SNX7
• Ensembl ID: ENSGGOG00000023577
• Aliases: None
• Description: None

Sequence

>retro_ggor_744
TTAAAAAACCGCCTAGAAGAGTTCATGGAAATGAATAACTTTATTGAAATTTTTAGCCAGAAAACAAATTTGATAGATAA
AATATCTTGGAGAATTTTCAAGGAAGAAAGGGAATATTTTGATGAAATGAAAGAATATGGTCCAATTCATATCCTGTGGT
TAGTGTCAGAAGAGGATCTGGTTGATACTCTAAAAGATGTTGACAGCTGCACTGACAGATGCTGTAAGGCCACTGAAAAA
TGGAAGTTTGGACTCTCAGAGGCCCTGCTTCCTGTTGTACATGAGTACGTGCTTTATAGTGAAATGTTAATGGGTGTTAT
GAAAAGAAGAGACCAAATACAAGCAGAACTGGATTCCAAAGTTGAAGCTTTGTCCTATAAAAAGGCAGATAGTGATCTGC
TTACAGAGGAGACTGGAAAACTTGAAGATAAAGTAGAATATGCTAATAATGCCCTGAAAGCAGAATGGGAAAGATGGCAA
CAAAATATGCAAAATGATATCAAGTTAGCATTTACAGATATGGCTGAGGAGAGTATCCACTATTATGAACAGTGCCTTAC
TACATGGGAACCATTCCTCACATCACCAACCTCC

Alignment

ORF - retro_ggor_744 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 76.0 %
• Parental protein coverage: 51.41 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  VKNRPEEFMEMNNFIELFSQKINLIDKISQRIYKEEREYFDEMKEYGPIHILWSASEEDLVDTLKDVASC
          .KNR.EEFMEMNNFIE.FSQK.NLIDKIS.RI.KEEREYFDEMKEYGPIHILW..SEEDLVDTLKDV.SC
Retrocopy LKNRLEEFMEMNNFIEIFSQKTNLIDKISWRIFKEEREYFDEMKEYGPIHILWLVSEEDLVDTLKDVDSC

Parental  IDRSCKATEKRMSGLSEALLPVVHEYVLYSEMLMNKMKLLDPLESDFDDSIEEMVVTYKGGTTEYLPEEI
          .DR.CKATEK...GLSEALLPVVHEYVLYSEMLM..MK..D......D...E.....YK......L.EE.
Retrocopy TDRCCKATEKWKFGLSEALLPVVHEYVLYSEMLMGVMKRRDQIQAELDSKVE--ALSYKKADSDLLTEET

Parental  GKLEDKVECANNALKADWERWKQNMQNDIKLAFTDMAEENIHYYEQCLATWESFLTSQTN
          GKLEDKVE.ANNALKA.WERW.QNMQNDIKLAFTDMAEE.IHYYEQCL.TWE.FLTS.T.
Retrocopy GKLEDKVEYANNALKAEWERWQQNMQNDIKLAFTDMAEESIHYYEQCLTTWEPFLTSPTS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain_prefrontal_cortex	0.24 RPM	3.21 RPM
SRP007412_cerebellum	0.08 RPM	0.79 RPM
SRP007412_heart	0.19 RPM	1.94 RPM
SRP007412_kidney	2.00 RPM	15.70 RPM
SRP007412_liver	0.32 RPM	3.75 RPM
SRP007412_testis	0.73 RPM	17.09 RPM

ChIP-Seq

Gorilla gorilla was not studied using ChIP-Seq data.

EST

Gorilla gorilla was not studied using EST data.

TSS

Gorilla gorilla was not studied using FANTOM5 data.

Lab

retro_ggor_744 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_ggor_744 has 0 orthologous retrocopies within eutheria group .

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000031461	1 retrocopy	retro_btau_453,
Choloepus hoffmanni	ENSCHOG00000008131	2 retrocopies	retro_chof_1097, retro_chof_1388,
Gorilla gorilla	ENSGGOG00000023577	1 retrocopy	retro_ggor_744 ,
Macropus eugenii	ENSMEUG00000011320	1 retrocopy	retro_meug_1016,
Sarcophilus harrisii	ENSSHAG00000002487	1 retrocopy	retro_shar_420,
Tupaia belangeri	ENSTBEG00000000168	1 retrocopy	retro_tbel_2595,