>retro_gmax_43
TTATGTGGAACTCCTGGAATTACAATGGACTAGTAAGTTGCACTTGCAAGTCCTAGTTCATACACGATTAAGAGGATTTT
GTGTCTGGAAATTCCAATTGATACATACCTCAATTTCAATTTTGTTGGAAGGCTTTTGAGACCTAAACACAATTCTCTAA
AAGGGGTATAAGCTTCTATAGGTTGTCATGTGTATATTAGAAAAAATGGTTCAATAAAAGATTCATACAAGGAAGGAAAC
TAAGAGGAAGACCAGACTATGAGCATCTCAATGAGAAAATCCACATCTTGATTGAGACACATTTACCTGATAATATTTTT
GACATAAGGCTTTGGCAAGCTCATGAAATTATAGAATAACTACTCAAAACTGTGGAAGAATTTGATGACTATATTAAGAA
ACAACATTTGCATGAACTAACAATGCTAGATTCAAATTTTAGATAAAAGAGTCATCAACTAAGTGGAAGTGTATCTCCAT
TTAATTCCAATGGAATGAGACAAACTAAAACT
ORF - retro_gmax_43 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
70.35 % |
Parental protein coverage: |
60.85 % |
Number of stop codons detected: |
5 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | LRGTPGMTMDWQVAPASPSSYTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEASTGCRVYIRGKG |
| L.GTPG.TMD..VA.ASPSSYT.KRIL.LEIP.DTY.NFNFVGRLL.P..NSLK.V.AS.GC.VYIR..G |
Retrocopy | LCGTPGITMD**VALASPSSYTIKRILCLEIPIDTYLNFNFVGRLLRPKHNSLKGV*ASIGCHVYIRKNG |
|
Parental | SIKDPDKE-EKLRGRPGYEHLNEQLHILIEADLPANVVDLRLRQAQEIIEELLKPVEESEDYIKRQQLRE |
| SIKD..KE..KLRGRP.YEHLNE..HILIE..LP.N..D.RL.QA.EIIE.LLK.VEE..DYIK.Q.L.E |
Retrocopy | SIKDSYKE<RKLRGRPDYEHLNEKIHILIETHLPDNIFDIRLWQAHEIIE*LLKTVEEFDDYIKKQHLHE |
|
Parental | LAMLNSNFREESPGPSGSVSPFNSSGMKRAKT |
| L.ML.SNFR..S...SGSVSPFNS.GM...KT |
Retrocopy | LTMLDSNFR*KSHQLSGSVSPFNSNGMRQTKT |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Glycine max was not studied using RNA-Seq expression data.
Glycine max was not studied using ChIP-Seq data.
Glycine max was not studied using EST data.
Glycine max was not studied using FANTOM5 data.
retro_gmax_43 was not experimentally validated.
Retrocopy orthology:
Glycine max does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.