>retro_gmor_1
CAGCGGCGCATCGTTTCCAAGGACGGCCACAACAACGTGAGGATCGACAACGTGGAAGGCATGGTCAAGCTGTACCTGCA
CGACATCTGGACTACCGTGGTGGACATGAAGTGGCGCTACAAACTCACTCTGTTCGCCTCCACCTTCGTCATGACCTGGT
TCTTTTTCGGGGTTATCTTCTACTTCATCAGCATGGGAAACGGGGACTTTGAGGCGGTGCTGCCGTCCAACCACACGCCC
TGCGTGGAGAACGCCAAGACGCTGACCGGCGCCTTCCTCTTCTCCCTGGAGTCGCAGACCACCATCGGCTATGGCTTCCG
CTACATTAACGAGGAATGCCCTCTGGCCATCTTCACCCTGGTGGCTCAGCTGGTGATCACCGGACTGGCAGAGATCTTCG
TCACCGGGGCTTTCCTGGCCAAGCTGGCTCGGCCCAAGAAGCGCGCCGAGACCATCAAGTTCAGCCGCTCGGCGGTGGTG
TGCCGGCGGGAGGGGAAGCTGTGCATCATGGTGCGCGTGGCCAACATGAGGAAGAGCTTGCTAGTCCAGTGCCAGCTCAC
GGGCAAGCTCCTCCACCCAAAGGTGACGCAGGAGGGCGAGAAGACACTGGTGCACCAGAGCAGCGTCAACTTCTACATGG
ACTCCAGCGGCGAGTGCCCCTTCCTCATCCTGCCCCTGACCTTCTACCACGTGCTGGACGAGAGCAGCCCCCTTGTGGGC
CTGACGGCCGACAACCTGCACACCCGAGACTTTGAGCTGCTGGTGACCCTGAACGCCACCATGGAGTCAACGGCTGCCAC
CTGCCAGAGCCGCACGTCCTACGTGCCCCAGGAGATCCTGTGGGGCTACGAGTTCAAGCCGGTGCTCTTCAGCAACAACA
ACAGCCGCTATGTGGCCGACTTCAGCTTCTTTGATAAAGTGCAGGCGAGCGCTGATTCCATGTTTCTTAGCAACAACACA
GAGAAGCTCAAGCTGGAGGAAGAATAT
ORF - retro_gmor_1 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
60.83 % |
Parental protein coverage: |
56.34 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | RRRVLSKDGRSNVLIEHVSGRSALYLRDLWTTFLDMQWRYKLFLFSATFAGTWFLFGLLWYLVALVHGDL |
| .RR..SKDG..NV.I..V.G...LYL.D.WTT..DM.WRYKL.LF..TF..TWF.FG...Y......GD. |
Retrocopy | QRRIVSKDGHNNVRIDNVEGMVKLYLHDIWTTVVDMKWRYKLTLFASTFVMTWFFFGVIFYFISMGNGDF |
|
Parental | LEFDPLPSNHTPCVMEMRTLTGAFLFSLESQTTIGYGFRCITEECPHAIILLIVQLVITMVMEIFITGTF |
| .....LPSNHTPCV....TLTGAFLFSLESQTTIGYGFR.I.EECP.AI..L..QLVIT...EIF.TG.F |
Retrocopy | EAV--LPSNHTPCVENAKTLTGAFLFSLESQTTIGYGFRYINEECPLAIFTLVAQLVITGLAEIFVTGAF |
|
Parental | LAKVARPKKRGETVKFSQYALVSNYQGRPCLMIRVANMRKSLLLGCQVTGKLLQTSLTKEGETVRLDQQN |
| LAK.ARPKKR.ET.KFS..A.V....G..C.M.RVANMRKSLL..CQ.TGKLL....T.EGE.....Q.. |
Retrocopy | LAKLARPKKRAETIKFSRSAVVCRREGKLCIMVRVANMRKSLLVQCQLTGKLLHPKVTQEGEKTLVHQSS |
|
Parental | VPFQVDTSSDSPFLIIPLTFYHVIDHTSPL |
| V.F..D.S...PFLI.PLTFYHV.D..SPL |
Retrocopy | VNFYMDSSGECPFLILPLTFYHVLDESSPL |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Gadus morhua was not studied using RNA-Seq expression data.
Gadus morhua was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_gmor_1 retrocopy.
Gadus morhua was not studied using FANTOM5 data.
retro_gmor_1 was not experimentally validated.
Retrocopy orthology:
Gadus morhua does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
3 parental genes, and
3 retrocopies.