RetrogeneDB ID: | retro_hsap_3061 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 4:83501272..83502203(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000248113 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PTPN11 | ||
Ensembl ID: | ENSG00000179295 | ||
Aliases: | PTPN11, BPTP3, CFC, NS1, PTP-1D, PTP2C, SH-PTP2, SH-PTP3, SHP2 | ||
Description: | protein tyrosine phosphatase, non-receptor type 11 [Source:HGNC Symbol;Acc:9644] |
Percent Identity: | 89.49 % |
Parental protein coverage: | 52.61 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | ILPFDHTRVVLHDG-DPNEPVSDYINANIIMPEFETKCNNSKPKKSYIATQGCLQNTVNDFWRMVFQENS |
ILPFD.T.VVLHDG.DPNEPVS.YINANIIMPEFETKCNNSKPKKSYIATQGCLQNTVNDFWRMVFQ.NS | |
Retrocopy | ILPFDNTKVVLHDG<DPNEPVSGYINANIIMPEFETKCNNSKPKKSYIATQGCLQNTVNDFWRMVFQ-NS |
Parental | RVIVMTTKEVERGKSKCVKYWPDEYALKEYGVMRVRNVKESAAHDYTLRELKLSKVGQGNTERTVWQYHF |
R.IVMT.KE.ERGKSKCVKYWPDEYALKEYGVMRVRNVKESAAHDYTLRELKLSK.G.GN.ERTV.QYHF | |
Retrocopy | RLIVMTMKEAERGKSKCVKYWPDEYALKEYGVMRVRNVKESAAHDYTLRELKLSKAGEGNSERTV*QYHF |
Parental | RTWPDHGVPSDPGGVLDFLEEVHHKQESIMDAGPVVVHCSAGIGRTGTFIVIDILIDIIREK-GVDCDID |
RTW.DHGV.S.PGGVLD.LE.VHHKQESIMDAGPV.VHCSAGIGRTGTFIVIDILIDIIREK.GVDCD.D | |
Retrocopy | RTWADHGVLSNPGGVLDLLEKVHHKQESIMDAGPVLVHCSAGIGRTGTFIVIDILIDIIREK<GVDCDVD |
Parental | VPKTIQMVRSQRSGMVQTEAQYRFIYMAVQHYIETLQRRIEEEQKSKRKGHEYTNIKYSLADQTSGDQSP |
VP.TIQMV.S.RSGMVQTEA.YRFIYMAVQHYIETLQRRIE..QKSKRKGHEY.NIKY.LADQTSG.QSP | |
Retrocopy | VPQTIQMVWSTRSGMVQTEARYRFIYMAVQHYIETLQRRIEQKQKSKRKGHEYINIKYPLADQTSGNQSP |
Parental | LPPCTPTPPCAEMREDSARVYENVGLMQQQKSFR |
LPPCTP.PPCAEMR.DSARVYENVGL.QQQK.FR | |
Retrocopy | LPPCTPKPPCAEMRGDSARVYENVGLIQQQKTFR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 263 .94 RPM |
bodymap2_adrenal | 0 .06 RPM | 132 .33 RPM |
bodymap2_brain | 0 .02 RPM | 394 .29 RPM |
bodymap2_breast | 0 .00 RPM | 407 .53 RPM |
bodymap2_colon | 0 .02 RPM | 244 .85 RPM |
bodymap2_heart | 0 .02 RPM | 230 .25 RPM |
bodymap2_kidney | 0 .00 RPM | 164 .18 RPM |
bodymap2_liver | 0 .00 RPM | 136 .31 RPM |
bodymap2_lung | 0 .00 RPM | 155 .10 RPM |
bodymap2_lymph_node | 0 .00 RPM | 127 .17 RPM |
bodymap2_ovary | 0 .02 RPM | 141 .82 RPM |
bodymap2_prostate | 0 .00 RPM | 171 .56 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 276 .40 RPM |
bodymap2_testis | 0 .09 RPM | 163 .74 RPM |
bodymap2_thyroid | 0 .04 RPM | 231 .81 RPM |
bodymap2_white_blood_cells | 0 .02 RPM | 123 .01 RPM |
EST ID | Start | End | Identity | Match | Mis-match | Score |
---|---|---|---|---|---|---|
BF929364 | 83501581 | 83501831 | 100 | 250 | 0 | 250 |
Species | RetrogeneDB ID |
---|---|
Macaca mulatta | retro_mmul_1877 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000012464 | 1 retrocopy | |
Homo sapiens | ENSG00000175354 | 2 retrocopies | |
Homo sapiens | ENSG00000179295 | 5 retrocopies | |
Gorilla gorilla | ENSGGOG00000010689 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000013253 | 4 retrocopies | |
Nomascus leucogenys | ENSNLEG00000000078 | 5 retrocopies | |
Pongo abelii | ENSPPYG00000004976 | 4 retrocopies |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .02 RPM |
CEU_NA12760 | 0 .04 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .06 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .02 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .06 RPM |
TSI_NA20532 | 0 .03 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .03 RPM |
TSI_NA20765 | 0 .02 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .03 RPM |
TSI_NA20798 | 0 .03 RPM |
YRI_NA18870 | 0 .03 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .05 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .05 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .02 RPM |