RetrogeneDB ID: retro_hvul_32

Retrocopy location

• Organism: Barley (Hordeum vulgare)
• Coordinates: 2:543511546..543512089(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: MLOC_78418
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: MLOC_74301
• Aliases: None
• Description: None

Sequence

>retro_hvul_32
ATGGCTCTGGCCGCCGCCGCCGCCGTCGCCGTACCGTTCCTCCTCTACGCCCGCCTCGGACCGCGCTCCGCGCTGGCGCT
GTCCCCCCGCCGCCTGCTGTCCTGCTCCACACCCGCATACGAGCCCCGCCAGTCCGCGCGGCCGCCGTTGTCGAAGCAGC
CCGAGCCCGAGTCCCAGGTGCCGTGGAGGGCCGCGGAGGCCGAGATCCTCCGCGACGTCGGCCCCGTCGTGCAGCTCATC
AAGGACATCCTCCACTCGGACAGATACGCAGACGGCGAATGCCTCGGTCCCGCGGACGAAACCGTCGTTGCGCAGAAGCT
CCTGGCCTATCATCCACGCGCGGAAGATAAGGTTGGCTGCGGGCTTGACGGCATCATGGTCGACAGGCACCCGCAGTTCA
GGAAGTCTAGATGCCTCTTCGTCGTTCGCATGGATGGCGTCTGGATCGATTTCTCCTACCAGAAGTGCCTCCGTGAGTAC
ATCCGGAAGAAGTATCCGTCGCATGGGGAGCGATTTATACGAGAACATTTCAAGCGAACCTGA

Alignment

ORF - retro_hvul_32 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 64.66 %
• Parental protein coverage: 63.39 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  PWEAAEAEILLKVGPVVELVKDILHSRRYGNGAFLNPEDEKVVVEKVLAHHPRSEDKIGCGLHAIMVNKH
          PW.AAEAEIL..VGPVV.L.KDILHS.RY..G..L.P.DE.VV..K.LA.HPR.EDK.GCGL..IMV..H
Retrocopy PWRAAEAEILRDVGPVVQLIKDILHSDRYADGECLGPADETVVAQKLLAYHPRAEDKVGCGLDGIMVDRH

Parental  PDFKMSRCLYVVRTNGAWADFSYRKCLRAYIKGAYPSHADKFIHKH
          P.F..SRCL.VVR..G.W.DFSY.KCLR.YI...YPSH...FI..H
Retrocopy PQFRKSRCLFVVRMDGVWIDFSYQKCLREYIRKKYPSHGERFIREH

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Hordeum vulgare was not studied using RNA-Seq expression data.

ChIP-Seq

Hordeum vulgare was not studied using ChIP-Seq data.

EST

Hordeum vulgare was not studied using EST data.

TSS

Hordeum vulgare was not studied using FANTOM5 data.

Lab

retro_hvul_32 was not experimentally validated.

Homology

Retrocopy orthology:

Hordeum vulgare does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Hordeum vulgare	MLOC_74301	1 retrocopy	retro_hvul_32 ,