RetrogeneDB ID: | retro_hvul_48 | ||
Retrocopy location | Organism: | Barley (Hordeum vulgare) | |
| Coordinates: | 2:558962424..558962712(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | MLOC_74843 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_hvul_48
ACAAGGTACGTGGAGGTGGACGAGGACAAAGGCACAGAGCTGTTCTACTACTTCGTGGAGTCTGAGTCCGGCGCGGAGGA
CGCTCCTTTCCTCCTCTGGCTCACCGGCGGCGACCGTTGCTCCGTGCTCAGCGGCCTCGCCTTGGAGATCGGTACGTCTA
GCTTGCTTGCATTCTCAAGCGTCGAATCTCATATCGCTGCTCTCCGACATCATTATCGTGTGTATTATTCCATACATGTG
GTGGACATGGCGGCAACTGCAGGGCCATTCCAGTTCGTCCCAGAGCCT
ORF - retro_hvul_48 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 54.08 % |
| Parental protein coverage: | 56.07 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | TRYVEVDEDNGTELFYYFIESEAGTEDAPFLLWLTGGDHCTVFSGLAFEIGPVKFVVEPYSGTTPRLEIN |
| TRYVEVDED.GTELFYYF.ESE.G.EDAPFLLWLTGGD.C.V.SGLA.EIG.........S......... | |
| Retrocopy | TRYVEVDEDKGTELFYYFVESESGAEDAPFLLWLTGGDRCSVLSGLALEIGTSSLLA--FSSVESHIAAL |
| Parental | PHSWTKVANILFVDTPVGAG-FSFSRRP |
| .H.......I..VD....AG.F.F...P | |
| Retrocopy | RHHYRVYYSIHVVDMAATAGPFQFVPEP |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Hordeum vulgare was not studied using RNA-Seq expression data.
Hordeum vulgare was not studied using ChIP-Seq data.
Hordeum vulgare was not studied using EST data.
Hordeum vulgare was not studied using FANTOM5 data.
retro_hvul_48 was not experimentally validated.
Retrocopy orthology:
Hordeum vulgare does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Hordeum vulgare | MLOC_74843 | 1 retrocopy |
retro_hvul_48 ,
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