>retro_lafr_1011
GTGGAAACCATGACATTGAAAATTCAAGACAAGATACCTGCTCAGACGAAGTCACCTAAAGAAATTGATAAGGCGAACAT
TCATGTGTTGGACTCAGAAAGGAAAATGAATCCAGTGGAAGAGGATAGAAATGTGTACACTGAGAAGCACTCATGCAATC
TGTTTACGTGAAAGGAAGTCCTGGCAGCTGTCATTGCTGGCAGAGTTACTGGCTTTCTCTTTGCAGTGTTCCTCACCCTG
TTCTCGGTGTATGGCATCAGGAAGAAGGTGAAGGAAGCTATATGACCTCAGGGAATGCAGACCATCCGGTGCTGCTTAAC
TGAAGGCACCTACTAAGGAATTTTAT
ORF - retro_lafr_1011 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
72.41 % |
Parental protein coverage: |
60.85 % |
Number of stop codons detected: |
2 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | VETTTLKIQDKIPAQTKSYEEIDKENVQVSDSERKMDPAEEDTNVYTEKHSDNLFKRKEVLAAVIAGGVI |
| VET.TLKIQDKIPAQTKS..EIDK.N..V.DSERKM.P.EED.NVYTEKHS.NLF..KEVLAAVIAG.V. |
Retrocopy | VETMTLKIQDKIPAQTKSPKEIDKANIHVLDSERKMNPVEEDRNVYTEKHSCNLFT*KEVLAAVIAGRVT |
|
Parental | GFLFAIFLILLLVYRMRKKDEGS-YDLGERKPSSAAYQKAPTKEFY |
| GFLFA.FL.L..VY..RKK.....YDL.E..PS.AA..KAPTKEFY |
Retrocopy | GFLFAVFLTLFSVYGIRKKVKEA>YDLRECRPSGAA*LKAPTKEFY |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Loxodonta africana was not studied using RNA-Seq expression data.
Loxodonta africana was not studied using ChIP-Seq data.
Loxodonta africana was not studied using EST data.
Loxodonta africana was not studied using FANTOM5 data.
retro_lafr_1011 was not experimentally validated.
Retrocopy orthology:
Loxodonta africana does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.