RetrogeneDB ID: | retro_lper_13 | ||
Retrocopy location | Organism: | Leersia perrieri | |
| Coordinates: | 1:3605321..3605888(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | LPERR01G05270 | |
| Aliases: | None | ||
| Status: | KNOWN_PROTEIN_CODING | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | LPERR05G04920 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_lper_13
ATGGCGGCTTCATTGGGACTTTGCCACGACACGTCATCCTACGCCTACTCATCCTTGTACGGCTTCCCTCCTCTCATGGC
CGACGACGTCGCCGCCGTCGACTACAACCGCAGCAGCTTCTTCCCGGCGGCCGAGTCGTCGTACTGCTCTCATCATCATC
ATCATCAGCTGCCCGTGGTGCTCGCCGGCGGCGGCGGCAACAGCAATGAGTACTATTATTCCGTGTCGTCGTCGTCGTCG
TCTTCGACGGCGGCGACGGCGGCGGCGGCGAGTAGTAGGATTGGGTTTAGGACGAGGTCGGAGGTGGAGGTGCTGGACGA
CGGGTACAAGTGGAGGAAGTACGGGAAGAAGGCGGTGAAGAGCAGCCCCAACCCGAGGAACTACTACCGATGCTCGGCGC
CAGGGTGCGGCGTCAAGAAACGCGTCGAGCGCGACCGACACGACCGCCGCTACGTCGTCACCACCTACGACGGCGTCCAC
AACCACGCCGCCAACGCCCCCACGCCGCCGTGGAGCATCGTGCGGCCGGCGGCGGCGGCGGCGCACTCGTCGGAGTCGTC
GTTCTGA
ORF - retro_lper_13 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 65.38 % |
| Parental protein coverage: | 53.06 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | GTVSDEYPDNESIMMRCESEEKKARVNGRIGFRTRSEVEIMDDGFKWRKYGKKAVKNSPNPRNYYRCSSE |
| G..S.EY....S...........A....RIGFRTRSEVE..DDG.KWRKYGKKAVK.SPNPRNYYRCS.. | |
| Retrocopy | GGNSNEYYYSVSSSSSSSTAATAAAASSRIGFRTRSEVEVLDDGYKWRKYGKKAVKSSPNPRNYYRCSAP |
| Parental | GCNVKKRVERDREDHRYVITTYDGVHNHASPGAT |
| GC.VKKRVERDR.D.RYV.TTYDGVHNHA....T | |
| Retrocopy | GCGVKKRVERDRHDRRYVVTTYDGVHNHAANAPT |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Leersia perrieri was not studied using RNA-Seq expression data.
Leersia perrieri was not studied using ChIP-Seq data.
Leersia perrieri was not studied using EST data.
Leersia perrieri was not studied using FANTOM5 data.
retro_lper_13 was not experimentally validated.
Retrocopy orthology:
Leersia perrieri does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Leersia perrieri | LPERR05G04920 | 1 retrocopy |
retro_lper_13 ,
|