RetrogeneDB ID: retro_lper_27

Retrocopy location

• Organism: Leersia perrieri
• Coordinates: 7:9207594..9208755(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: LPERR07G09630
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: LPERR01G36460
• Aliases: None
• Description: None

Sequence

>retro_lper_27
ATGGGCTCCTCGCCGCCACAGCCAAAGAGGCGGTTCTCTGCGCACATGCTGATCGCATCACTTGTCTTTCTCGTGCTGCT
GTTTGTCGCCGGCGGGGCCGTAACGGTTGATCACAACGACCGGCCGACCAGGATCAGCCCGTCCTCGAAATCACCGGACG
CGACGTCGGCTGCCGCCGAGGAGATCACCACGCCCCTGTCGCGCAAGATGCTGCGTGATAACGACCGAACGGGCGGCGGA
GGCCATAGCGATCAGCCTCTCCCGAGGGGCATCGTGCACGGCAAGTCCAACCTCGAGATGCAGTCCATGGTCGGCGACCC
GGAGAAGGATCAACAACCAACGACGACGAAGAAGAAGACGAAGAGCCTCCTGGCGATCCCCGTAGGGATCAAGAACAAGG
CGGCCGTGGACAAGCTGGTGTCCAAGTTCCCCGCCGACGAGTTCGCCGTGATCCTCTTCCACTATGACGGCGCAGTGGAG
CAGTGGGGCGACGTGGAATCGTTGCAGGGCCGCGCGGTGGTGCACGTGGCGGCGGCGGGGCAGACCAAGTGGTGGTTCGC
CAAGCGGTTCCTGCACCCGGACGTGGTGGCCGAGTACGACCACGTTTTCCTCTGGGACGAGGACGTCGAGGTGGACGCCT
TCGACCCGCTCCGCTACCTCGACGTCGTCAGGAGGGAAGGCCTGGAGATCTCGCAGCCGGCGCTGGCCCGCGGGTCAGAG
ATCCACCATGGCATCACCGCGCGCCAGCTGAACGGTGGCGACGTGCACCGGCGGTTCTACCGGGCTGCGGGCCCAAGGTG
CGACGAGGGGAGCGCGGCGCCGCCGTGCACGGGTTGGGTGGAGATGATGGTGCCGGTGTTCTCGCGCGCGGCGTGGCGGT
GCGCGTGGGGGATGGTGCAGAACGACCTCGTCCACGGGTGGGGGCTCGACTACAAGCTCGGGTACTGTGCGGGGGGAGAC
TGGACGGTGAAGGTCGGCGTCGTGGACAGCGAGTACGTGCTGCACAGGGGCGTCCCCTCGCTCGGCGGCGGGAGGTCGGC
ATCGGCCAGCCGGATCGCGGTGAGGCGGCGATCGTACGCGGAGATGCAGATATTCAACAGGAGGTGGAAGGAGGCCGTGG
CGGCGGACGCATCGTGGGCCGATCCTTACCCGGAAAAGTAA

Alignment

ORF - retro_lper_27 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 65.41 %
• Parental protein coverage: 67.01 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  EALPKGIVQDKSNFEMESLGGNPERNTV-TAAGRPAKSLLAIPVGIKQKTVVDKLVSKFPSDKFTVMLFH
          ..LP.GIV..KSN.EM.S..G.PE.....T......KSLLAIPVGIK.K..VDKLVSKFP.D.F.V.LFH
Retrocopy QPLPRGIVHGKSNLEMQSMVGDPEKDQQPTTTKKKTKSLLAIPVGIKNKAAVDKLVSKFPADEFAVILFH

Parental  YDGAVDGWRDLK-WSDRAI-HVAAIDQTKWWFGKRFLHPDMVAEYDYIFLWDEDIEVDGFDPIRYLKIVK
          YDGAV..W.D......RA..HVAA..QTKWWF.KRFLHPD.VAEYD..FLWDED.EVD.FDP.RYL..V.
Retrocopy YDGAVEQWGDVESLQGRAVVHVAAAGQTKWWFAKRFLHPDVVAEYDHVFLWDEDVEVDAFDPLRYLDVVR

Parental  REGLEISQPALDHRSQIHHRLTLRARKG-QVHRRFYKTRGGGRCDGNSTGPPCTGWVEMMVPVFSRAAWR
          REGLEISQPAL...S.IHH..T.R...G..VHRRFY....G.RCD..S..PPCTGWVEMMVPVFSRAAWR
Retrocopy REGLEISQPALARGSEIHHGITARQLNGGDVHRRFYRA-AGPRCDEGSAAPPCTGWVEMMVPVFSRAAWR

Parental  CAWHMIQNDLIYAWGLDFKLGYCAGADRRLSVGIVDGEYVLHRGIPTLGDGKPQPA
          CAW.M.QNDL...WGLD.KLGYCAG.D....VG.VD.EYVLHRG.P.LG.G....A
Retrocopy CAWGMVQNDLVHGWGLDYKLGYCAGGDWTVKVGVVDSEYVLHRGVPSLGGGRSASA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Leersia perrieri was not studied using RNA-Seq expression data.

ChIP-Seq

Leersia perrieri was not studied using ChIP-Seq data.

EST

Leersia perrieri was not studied using EST data.

TSS

Leersia perrieri was not studied using FANTOM5 data.

Lab

retro_lper_27 was not experimentally validated.

Homology

Retrocopy orthology:

Leersia perrieri does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Leersia perrieri	LPERR01G36460	1 retrocopy	retro_lper_27 ,