RetrogeneDB ID: | retro_mdom_132 | ||
Retrocopylocation | Organism: | Opossum (Monodelphis domestica) | |
Coordinates: | 1:586109913..586110270(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMODG00000023155 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSMODG00000013977 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 94.07 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHIT |
MCDKEF.WALKNGDLDEVKDYVAKGEDVN.TLEGGRKPLHYAADCGQLEILEFLLLKGADINA.DKH.I. | |
Retrocopy | MCDKEFTWALKNGDLDEVKDYVAKGEDVNWTLEGGRKPLHYAADCGQLEILEFLLLKGADINALDKHQII |
Parental | PLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ |
PLLS.VYEGHVSCVK.LLSKGADKTVKGPDGLTAFEATDNQAIKALLQ | |
Retrocopy | PLLSTVYEGHVSCVKVLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .24 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
SRP007412_testis | 0 .00 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Loxodonta africana | ENSLAFG00000029544 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000013977 | 4 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000005642 | 4 retrocopies | |
Drosophila melanogaster | FBgn0051715 | 1 retrocopy |