RetrogeneDB ID: | retro_mdom_1431 | ||
Retrocopylocation | Organism: | Opossum (Monodelphis domestica) | |
Coordinates: | 5:17362643..17363380(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ADSS | ||
Ensembl ID: | ENSMODG00000006559 | ||
Aliases: | None | ||
Description: | adenylosuccinate synthase [Source:HGNC Symbol;Acc:292] |
Percent Identity: | 82.26 % |
Parental protein coverage: | 51.89 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | PVPPAMSLAEAGLAVASVPNGECGSSLARSGGNRVTVVLGAQWGDEGKGKVVDLLAQDADIVCRCQGGNN |
PV..AM.LAE.....A.VPNGE.G.SL...GGN.VTVVL..Q.G.EGKGKVVD.LAQ.A.I.C.CQGGN. | |
Retrocopy | PVVTAMLLAEIVHDMALVPNGEYGISLVQLGGNQVTVVLDTQ*GNEGKGKVVDVLAQEANIICCCQGGNS |
Parental | AGHTVVVDSVEYDFHLLPSGIINPNVTAFIGNGVVIHLPGLFEEAEKNVQKGK-GLEGWEKRLIISDRAH |
AGH.VVVDSVEYDFHLLPSGII.PNVTAFIGNGV.IHLPGLFEEAEKNVQKGK.GL.GWEKRLIISDRAH | |
Retrocopy | AGHSVVVDSVEYDFHLLPSGIITPNVTAFIGNGV-IHLPGLFEEAEKNVQKGK<GLKGWEKRLIISDRAH |
Parental | IVFDFHQAADGIQEQQRQEQAGKNLGTTKKGIGPVYSSKASRSGLRMCDLVSDFEGFSERFKVLANQYKS |
I.FDFHQAAD.IQE.QRQEQAGKNLGTTKKGIGPVYSSK.SRSG.R.CDLV.DFEGFSERFKVLANQ.K. | |
Retrocopy | IIFDFHQAADSIQE*QRQEQAGKNLGTTKKGIGPVYSSKTSRSGPRICDLVLDFEGFSERFKVLANQCKP |
Parental | IYPTLEIDIEGELQKLKGYMERIKPMVRDGVYFLYEAL |
IYPTLEI.IEG.LQKLK.YMERIKPMVRDG.YFL.EAL | |
Retrocopy | IYPTLEIVIEGKLQKLKDYMERIKPMVRDGFYFLSEAL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
SRP007412_testis | 0 .00 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000015815 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000017069 | 2 retrocopies | |
Homo sapiens | ENSG00000035687 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000017320 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000006559 | 1 retrocopy |
retro_mdom_1431 ,
|
Mustela putorius furo | ENSMPUG00000015741 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000013982 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000000057 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000002178 | 1 retrocopy |