RetrogeneDB ID: | retro_mdom_1842 | ||
Retrocopylocation | Organism: | Opossum (Monodelphis domestica) | |
Coordinates: | 8:66289183..66289918(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TIMMDC1 | ||
Ensembl ID: | ENSMODG00000018197 | ||
Aliases: | None | ||
Description: | translocase of inner mitochondrial membrane domain containing 1 [Source:HGNC Symbol;Acc:1321] |
Percent Identity: | 85.14 % |
Parental protein coverage: | 78.06 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | SPEETLPHHIKGPVYPETGWERLKELLVRDEHQPVPQEIDYIFKAATTGAIVGWIYGGIPAFYHAKQRYI |
SP...LPHHIKGPVYPETGWE.LKELLVRDE.QP.PQEIDYIFKAAT.GAIVGWIYGG.PAFY.AKQ.YI | |
Retrocopy | SPWRKLPHHIKGPVYPETGWESLKELLVRDERQPIPQEIDYIFKAATSGAIVGWIYGGVPAFYQAKQLYI |
Parental | SQSHAEIYYSRFDAVQSAQRAAIRGFIRYGWRWSWRTALFVTIFNTVSTGLNVYRNKNALSHFVVAGAAT |
SQSH.EIYY.RFDAVQSAQ.AAI.GFI.YGW.WS.RTALFVTIFNTVSTGLNVY.NKN.LSHFVVAG.A. | |
Retrocopy | SQSHSEIYYNRFDAVQSAQ*AAIGGFIQYGWWWS*RTALFVTIFNTVSTGLNVYGNKNTLSHFVVAGTAK |
Parental | GGLFRFYLGLSSMLAGGLFGAILGVPFGVMIMAIEKYQGETVWDRKQKARKELYELKLDEWKARLHVTDA |
GGLFR.YLGLSS.LAG.LFGAILGVPF.VMIMAIEKYQGETVWDRKQK...ELYELKLDEWKARLHVTDA | |
Retrocopy | GGLFRLYLGLSSVLAGVLFGAILGVPFRVMIMAIEKYQGETVWDRKQK---ELYELKLDEWKARLHVTDA |
Parental | VTEEFKSNLGKNQTEKDVKRIEELLNLPRNPSLTTDSED |
VTEEFK.NLG.NQ.E.D.KRIEELLNLPRN.S..TDS.D | |
Retrocopy | VTEEFKNNLGENQSERDIKRIEELLNLPRNSSI-TDSKD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
SRP007412_testis | 0 .00 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Echinops telfairi | ENSETEG00000002519 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000003777 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000018197 | 2 retrocopies |
retro_mdom_1842 , retro_mdom_419,
|
Oryctolagus cuniculus | ENSOCUG00000009500 | 1 retrocopy |