RetrogeneDB ID: | retro_mdom_191 | ||
Retrocopy location | Organism: | Opossum (Monodelphis domestica) | |
| Coordinates: | 8:32419831..32420332(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | ENSMODG00000025227 | |
| Aliases: | None | ||
| Status: | KNOWN_PROTEIN_CODING | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | UPRT | ||
| Ensembl ID: | ENSMODG00000027579 | ||
| Aliases: | None | ||
| Description: | uracil phosphoribosyltransferase (FUR1) homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:28334] |
Retrocopy-Parental alignment summary:
>retro_mdom_191
ATGAACGACCAGATCCGGGAGCTGCAGACCATCATCCGGGCCAAGACGGCCAGCCGCGGGGACTTCGTATTTTCCGCCGA
CCGTTTGATCCGGCTGGTGGTGGAAGAGGGCCTGAACCAGCTGCCCTACGAGCGGTGTACCGTGACCACGCCGACCGGCC
ACAAGTACGAGGGTATCAGTTTTGAGAAGGGCAACTGCGGTGTGAGCATCATGAGGAGTGGGGAGGCCATGGAGCATGGC
CTGCGCGACTGCTGCCGCTCCATCCGCATCGGCAAGATTCTCATCCAGAGCGACGAGGACACCCAGAGGGCCAAGGTCTA
TTACGCCAAGTTCCCCCCGGACATCGAGCGCAGGAAGGTCCTGCTCATGTACCCCATCCTGAGCACGGGGAACACCGTCA
TCGAGGCCGTGAAGGTCCTCATAGAGCACGGAGTGCAGCCCAGCGTCATCATCGTGCTCAGCCTCTTCTCCACGCCCCAC
GGCGCCACGTCTATCATCCGG
ORF - retro_mdom_191 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 91.62 % |
| Parental protein coverage: | 55.85 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | INDQIRELQTIIRDKTASRGDFMFSADRLIRLIVEEGLNQLPYKECTVTTPTGYKYEGVKFEKGNCGVSI |
| .NDQIRELQTIIR.KTASRGDF.FSADRLIRL.VEEGLNQLPY..CTVTTPTG.KYEG..FEKGNCGVSI | |
| Retrocopy | MNDQIRELQTIIRAKTASRGDFVFSADRLIRLVVEEGLNQLPYERCTVTTPTGHKYEGISFEKGNCGVSI |
| Parental | MRSGEAMEQGLRDCCRSIRIGKILIQSDEETQRAKVYYAKFPPDIYRRKVLLMYPILSTGNTVIEAIKVL |
| MRSGEAME.GLRDCCRSIRIGKILIQSDE.TQRAKVYYAKFPPDI.RRKVLLMYPILSTGNTVIEA.KVL | |
| Retrocopy | MRSGEAMEHGLRDCCRSIRIGKILIQSDEDTQRAKVYYAKFPPDIERRKVLLMYPILSTGNTVIEAVKVL |
| Parental | VEHGVQPSVIIVLSLFSTPHGATSIIR |
| .EHGVQPSVIIVLSLFSTPHGATSIIR | |
| Retrocopy | IEHGVQPSVIIVLSLFSTPHGATSIIR |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP007412_brain | 0 .00 RPM | 0 .00 RPM |
| SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
| SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
| SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
| SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
| SRP007412_testis | 0 .00 RPM | 0 .00 RPM |
Monodelphis domestica was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mdom_191 retrocopy.
Monodelphis domestica was not studied using FANTOM5 data.
retro_mdom_191 was not experimentally validated.
Retrocopy orthology:
Monodelphis domestica does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 3 parental genes, and 3 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Canis familiaris | ENSCAFG00000017218 | 1 retrocopy | |
| Monodelphis domestica | ENSMODG00000027579 | 1 retrocopy |
retro_mdom_191 ,
|
| Otolemur garnettii | ENSOGAG00000016773 | 1 retrocopy |