RetrogeneDB ID: | retro_mdom_233 | ||
Retrocopylocation | Organism: | Opossum (Monodelphis domestica) | |
Coordinates: | 3:117331371..117331890(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMODG00000003590 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSMODG00000003226 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 91.86 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAGSVAEREALEKLEDGHLNNSLGSPVQAEVYFPRLIVPFCGHIKGGMRPGKKILVMGIVDLNPESFKIS |
MAGSVA.REALEKLED.HLNN.LGS...AEVY.PRLI.PFCG.IKGGMRPGKKILVMGIVDLNPESFKIS | |
Retrocopy | MAGSVAQREALEKLEDRHLNNFLGSTFHAEVYLPRLIIPFCGPIKGGMRPGKKILVMGIVDLNPESFKIS |
Parental | LTCGDSEDPPADVAIELKAVFTDKQLIRNSCISGERGEEQSAIPYFPFIPDQPFRVEILCEHPRFRVFVD |
LTCGDSEDPPADVAIELKAVFTDKQLIRNSCISGERGEEQSAIPYFPFIPDQPFRVEILCEHP.FRV.VD | |
Retrocopy | LTCGDSEDPPADVAIELKAVFTDKQLIRNSCISGERGEEQSAIPYFPFIPDQPFRVEILCEHPGFRVIVD |
Parental | GHQLFDFYHRIETLSAIDTIKINGDLQITKLG |
G.QLFDFYHRIE.LS.IDTIKINGDLQITKLG | |
Retrocopy | GRQLFDFYHRIESLSTIDTIKINGDLQITKLG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 35 .76 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
SRP007412_testis | 0 .00 RPM | 31 .63 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000001067 | 1 retrocopy | |
Bos taurus | ENSBTAG00000000156 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000015222 | 1 retrocopy | |
Felis catus | ENSFCAG00000001209 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000003226 | 2 retrocopies |
retro_mdom_1350, retro_mdom_233 ,
|
Mus musculus | ENSMUSG00000042363 | 3 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000011885 | 2 retrocopies |