RetrogeneDB ID: | retro_mdom_362 | ||
Retrocopylocation | Organism: | Opossum (Monodelphis domestica) | |
Coordinates: | 1:285844000..285844659(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMODG00000012792 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSMODG00000016129 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 86.43 % |
Parental protein coverage: | 94.83 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | LQAAMWRRALLLLLWLAFASVQGLYFHIGETEKRCFIEEIPDETMVIGNYRTQLWDKQTETFLPSTPGLG |
LQ.AMW..ALLLLLWLAFASVQGLY.HI.E.EK.CFIEEI.D.TMVI.NY.TQLWDKQTETF.PST.GLG | |
Retrocopy | LQEAMWHQALLLLLWLAFASVQGLYLHIREMEKLCFIEEISDKTMVIRNY*TQLWDKQTETFRPSTLGLG |
Parental | MHVEVKDPEGKVVLSRQYGSEGRFTFTSHTPGDHQICLHSNSTRMTIFAGGKLRVHLDIQVGEHTNNYPE |
MHV.VKDPEGKVVL..QYGSEG.FTFTSHTPGDH.ICL.SNST.MTIFAGGKLRVHL.IQVGEHTNNYPE | |
Retrocopy | MHV*VKDPEGKVVLL*QYGSEGQFTFTSHTPGDH*ICLYSNSTTMTIFAGGKLRVHLGIQVGEHTNNYPE |
Parental | IAAKDKLTELQLRARQLLDQVEQIQKEQNYQRYREERFRMT-SESTNQRVLWWSIAQTVILILTGIWQMR |
IAA.DKLTELQLRA.QLLD.VEQIQKEQNYQ.YREE.F.MT..ESTNQRVLWWSIAQTVILILTGIWQMR | |
Retrocopy | IAANDKLTELQLRACQLLDRVEQIQKEQNYQWYREELFHMT<LESTNQRVLWWSIAQTVILILTGIWQMR |
Parental | HLKSFFEAKKL |
HLKSFFEA.KL | |
Retrocopy | HLKSFFEANKL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 245 .43 RPM |
SRP007412_cerebellum | 0 .00 RPM | 363 .34 RPM |
SRP007412_heart | 0 .00 RPM | 495 .39 RPM |
SRP007412_kidney | 0 .00 RPM | 659 .73 RPM |
SRP007412_liver | 0 .00 RPM | 502 .48 RPM |
SRP007412_testis | 0 .20 RPM | 274 .61 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Erinaceus europaeus | ENSEEUG00000007627 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000006810 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000016129 | 2 retrocopies |
retro_mdom_256, retro_mdom_362 ,
|
Oryctolagus cuniculus | ENSOCUG00000003964 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000014658 | 1 retrocopy |