>retro_mdom_452
CCTGCTCACGGGAGGACCCCATAAGCCATTACAGAAGGAGCTCAGTCACTGGGTCTCTCCAGTGCAGCAAAGGCACTGCT
GTTTGGGAATAATGGCAGTGAACTGATCCTGCATTTTGTGACACAGTGCAATGCTAAGCTCAAATGCATAATGGAAGAGG
TGAAAAAACAAGTGTAGTTGAGCTGGGCGGAGAAGAAGAAGACTGACCAGTTCCTGAGGGATGTGGTGCCAACCAGACTG
AAAATGCTGAACCCCATATATTGAACACTGGTCCTAGGTTCTCGGCATCCTTGTACTCCCTCATAATATCCCAGCCAGCC
TAAACCTCCTCACCAGCATGGTGGATGACACATGGCACTACACTAGAGATGAGTCCTTTGATATTAACTGGTACACACAT
TGGGCAGTACTAGCTGGCATCTACAACACTACAAAGCTTGTGATGATGTAGGACTCATCTCTTGACTGTGAAGACACGTT
GCACTTCCTTGAAAACAGAATCAGCAATGCCATAAACATGAGACACACAGCCAAATGGGTCAAGCCAACTGGGGAAGCAC
TTATCTAGGGAATGATGGGAGCAGTCGTGACTTTAAAGAACTTGAGAGTCCTAAAC
ORF - retro_mdom_452 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
76.7 % |
Parental protein coverage: |
64.35 % |
Number of stop codons detected: |
5 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | PAHGWTSEAIAEGAQSLGLSSAA-AGMFGNDGSELILHFVTQCNAKLNRVMEEEQKQVQLGQAEKRKTDQ |
| PAHG.T..AI.EGAQSLGLSSAA.A..FGN.GSELILHFVTQCNAKL...MEE..KQV.L..AEK.KTDQ |
Retrocopy | PAHGRTP*AITEGAQSLGLSSAAKALLFGNNGSELILHFVTQCNAKLKCIMEEVKKQV*LSWAEKKKTDQ |
|
Parental | FLRDAVETRLRML-IPYIEHWPRALGILVLPHNIPASLNLLTSMVDDMWHYAGDQSTDINWYTRRAVLAG |
| FLRD.V.TRL.ML..PYIEHW...LGILVLPHNIPASLNLLTSMVDD.WHY..D.S.DINWYT..AVLAG |
Retrocopy | FLRDVVPTRLKML>TPYIEHWS*VLGILVLPHNIPASLNLLTSMVDDTWHYTRDESFDINWYTHWAVLAG |
|
Parental | IYNTTELVMMQDSSPDFEDTWRFLENRISDAMNMGHTAKQVKSTGEALVQGMMGAAVTLKNLTGLN |
| IYNTT.LVMM.DSS.D.EDT..FLENRIS.A.NM.HTAK.VK.TGEAL..GMMGA.VTLKNL..LN |
Retrocopy | IYNTTKLVMM*DSSLDCEDTLHFLENRISNAINMRHTAKWVKPTGEALI*GMMGAVVTLKNLRVLN |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP007412_brain |
0 .00 RPM |
184 .87 RPM |
SRP007412_cerebellum |
0 .00 RPM |
276 .18 RPM |
SRP007412_heart |
0 .00 RPM |
1414 .80 RPM |
SRP007412_kidney |
0 .00 RPM |
1107 .46 RPM |
SRP007412_liver |
0 .00 RPM |
578 .51 RPM |
SRP007412_testis |
0 .59 RPM |
128 .47 RPM |
Monodelphis domestica was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mdom_452 retrocopy.
Monodelphis domestica was not studied using FANTOM5 data.
retro_mdom_452 was not experimentally validated.
Retrocopy orthology:
Monodelphis domestica does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
3 parental genes, and
4 retrocopies.