RetrogeneDB ID:

retro_mdom_768

Retrocopy
location
Organism:Opossum (Monodelphis domestica)
Coordinates:2:398117215..398117898(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:ETNK2
Ensembl ID:ENSMODG00000001210
Aliases:None
Description:ethanolamine kinase 2 [Source:HGNC Symbol;Acc:25575]


Retrocopy-Parental alignment summary:






>retro_mdom_768
ATCCTTGAATTCTTGTTCTATAGACTAATTGTCTGGCAGATAGTGAAAATCCATAACATCCATGCCAACAGCTGCCTACC
CAAACCTGGCCTGTGGTCCAAAATGTATAGCTATTTCATTCTTGTCAAGGTTTCTTTCAACTCCAAACTTTTCCAGAGCA
CATCCAGTATGATGGTCCTTAAGTAGGAAATAGCATGACTGAAAGAGTATCCTTTGCACCTGGATTTCTCTCATAGTGTT
TTGCCATAATGACCTGCTTTGAAAGAACATCATCTATGATGAAAAGAAAGATGTCAGATTCATAGACTATGAATATGCTG
GCTACAACTAATGAGCTTTTTATATTAGCAACCACTTCAATGAGTTTGCAGGTATGAATGAGGTAGACTGTAGCCTGTAC
CCCAGCTGAGAGGCTCAGTTGTGTTGACTGAATCACTACCTGCAGGCCCACAAGCAACTCTGCAAGTAAGGCTCAAGTGG
GAGGGCTGTAACACCCAGGGTTTAGAAACTCTACATATAAGTAGAAATGTTTGCACTGGCCTCTCATTTTTTTCTGGGCT
TTCTGGGCTCTCATCCAGAACCAGTTTCCTACCAATGACTTTAACTTTCTCAGATATGTGGTAATCAGGTTCAACCAATA
CTTCATGATGAAGCCTCAGGTGTTGGCCATGGAGATGCCAAAG

ORF - retro_mdom_768 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 73.59 %
Parental protein coverage: 57.54 %
Number of stop codons detected: 10
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalILEPRLYRLIAREMAKIHAIHANGCLPKPGLWSKMYSYFTLVKDSFNSRLSQSIPSVEVLEQEMAWLKEH
ILE...YRLI.....KIH.IHAN.CLPKPGLWSKMYSYF.LVK.SFNS.L.QS..S..VL..E.A.LKE.
RetrocopyILEFLFYRLIVWQIVKIHNIHANSCLPKPGLWSKMYSYFILVKVSFNSKLFQSTSSMMVLK*EIA*LKEY
ParentalLSQLD-SPIVFCHNDLLCKNIIYNEKKGHVRFIDYEYAGYNYQAFDIGNHFNEFAGVNEVDYSLYPSRET
...LD.S.IVFCHNDLL.KNIIY.EKK..VRFIDYEYAGYN..AF.I.NHFNEFAG.NEVD.SLYPS.E.
RetrocopyPLHLD>SLIVFCHNDLL*KNIIYDEKKD-VRFIDYEYAGYN**AFYISNHFNEFAGMNEVDCSLYPS*EA
ParentalQLHWLNHYLQAHKQLCKEGWGGTAVTPREVEKLYVQVNKFALASH-FFWAFWALIQNQFSTIDFDFLRYA
QL..LNHYLQAHKQLCK.G..G.AVTPR.V.KLY..V..FALASH.FFWAFWALIQNQF.T.DF.FLRY.
RetrocopyQLC*LNHYLQAHKQLCK*GSSGRAVTPR-V*KLYI*VEMFALASH>FFWAFWALIQNQFPTNDFNFLRYV
ParentalVIRFNQYFKVKPQVSALEMPK
VIRFNQYF..KPQV.A.EMPK
RetrocopyVIRFNQYFMMKPQVLAMEMPK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain 0 .00 RPM 0 .00 RPM
SRP007412_cerebellum 0 .00 RPM 0 .00 RPM
SRP007412_heart 0 .00 RPM 0 .00 RPM
SRP007412_kidney 0 .00 RPM 0 .00 RPM
SRP007412_liver 0 .00 RPM 0 .00 RPM
SRP007412_testis 0 .00 RPM 0 .00 RPM

ChIP-Seq - click to see more details

Monodelphis domestica was not studied using ChIP-Seq data.

EST - click to see more details

No EST(s) were mapped for retro_mdom_768 retrocopy.

TSS - click to see more details

Monodelphis domestica was not studied using FANTOM5 data.

Lab - click to see more details

retro_mdom_768 was not experimentally validated.

Retrocopy orthology:
Monodelphis domestica does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species Parental gene accession Retrocopies number
Monodelphis domestica ENSMODG00000001210 1 retrocopy
retro_mdom_768 ,


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