RetrogeneDB ID: | retro_meug_1004 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold2561:14407..14896(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MRPL28 | ||
Ensembl ID: | ENSMEUG00000000407 | ||
Aliases: | None | ||
Description: | mitochondrial ribosomal protein L28 [Source:HGNC Symbol;Acc:14484] |
Percent Identity: | 85.37 % |
Parental protein coverage: | 63.81 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | YRYTNNDKLSRRVRKIWKPHLYERELYSEILDKKFKIMVTMRTLDLIDEAYGFDFYILKTPKEDLCSKFG |
.RYTN.DKLSR..RK.WKPHLYE.ELYSEILDKKFKIMVT.RTLDLIDEAYGF.FY.LK.PKEDLCSKFG | |
Retrocopy | HRYTN-DKLSRCLRKTWKPHLYEQELYSEILDKKFKIMVTRRTLDLIDEAYGFNFYTLKMPKEDLCSKFG |
Parental | MDLKRGMLLRLARRDPQLHPDDPEKREAIYNKYKEFVIPEEEAEWVGLTLEEAVEKQRLLEEKDPVPLFK |
MDLKRGMLL.LA.RDP.LHPDDPEKREAI.NKYKEFVIP.EEAEWV.LTLE.AVEKQRLL.EKDP.PLFK | |
Retrocopy | MDLKRGMLLHLAQRDPRLHPDDPEKREAIDNKYKEFVIPVEEAEWVSLTLEKAVEKQRLLGEKDPIPLFK |
Parental | VYVEELIQQLQEQALSQPAVMQRK |
V.VE..IQQLQ.QALSQ.AVMQRK | |
Retrocopy | VHVEGFIQQLQDQALSQSAVMQRK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Macropus eugenii | ENSMEUG00000000407 | 1 retrocopy |
retro_meug_1004 ,
|
Mus musculus | ENSMUSG00000024181 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000011480 | 1 retrocopy |