RetrogeneDB ID: | retro_meug_1103 | ||
Retrocopy location | Organism: | Wallaby (Macropus eugenii) | |
| Coordinates: | Scaffold289113:727..1312(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | ENSMEUG00000014806 | |
| Aliases: | None | ||
| Status: | KNOWN_PSEUDOGENE | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | MAEU-DBB | ||
| Ensembl ID: | ENSMEUG00000004650 | ||
| Aliases: | None | ||
| Description: | MHC class II antigen [Source:UniProtKB/TrEMBL;Acc:A5JEE1] |
Retrocopy-Parental alignment summary:
>retro_meug_1103
AAGAGTCTGCACAATGGAGAGGAGAATGTCCGCTTGGACAGCGACGTGGGGCAGTTCGTGGCGGGGACGGAGCTGGGGCG
GCCAAGTGCTGAGTACTGGAACGGTCCGAAGGATATCCTGGAGGAAAAGCGAGCCGTTGTGGACACGGTGTGCAGACACA
ACTACGAGGTATACAAGCCCTTCACGTTGGACAGGAGAGTCCAGCCCAGAGTGACCATCTCCCCCTCCAAGACAGACGCC
CTGCAGCACCTGCTGCTCTGCTCTGTCACTGGCTTCCATCCAAGCAAGATCAAGGTCACCTGGTTCAAGAATGGGCAGGA
GGAGACAACTGGGGTCGTGTCCAGGGGAGTGATACAACATGGTGACTGGACCTACCAGACACTGGTCATGTTGGAAATGA
CTTCCCAGAGCAGAGATGTCTACACCTGCAGTGTGGAGCATGCCAGCCTACAGAGCCCCATCAGTGTGGAATGGAGGGCA
CAGTCTGAATCTGCCCAGAGCAAACTGCTGAGTGGAATTGGAGGCTTTGTCCTGGGGCTTATCTTCCTCAGTGTAGGACT
AATCATCCACCTGAAGAACAAGAAA
ORF - retro_meug_1103 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 86.15 % |
| Parental protein coverage: | 89.35 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | RDIYNGEEDVRFDSDVGQFVAVTELGRPDAEYWNGQEDSLEEYRGYVDTLCRHNYEA--TLHLDRRVQPR |
| ....NGEE.VR.DSDVGQFVA.TELGRP.AEYWNG..D.LEE.R..VDT.CRHNYE......LDRRVQPR | |
| Retrocopy | KSLHNGEENVRLDSDVGQFVAGTELGRPSAEYWNGPKDILEEKRAVVDTVCRHNYEVYKPFTLDRRVQPR |
| Parental | VTISPSKTDALQHLLVCSVTGFYPSKIKVTWFKNGQEETAGIVSTGVIQHGDWTYQTLVMLEMTPQSRDV |
| VTISPSKTDALQHLL.CSVTGF.PSKIKVTWFKNGQEET.G.VS.GVIQHGDWTYQTLVMLEMT.QSRDV | |
| Retrocopy | VTISPSKTDALQHLLLCSVTGFHPSKIKVTWFKNGQEETTGVVSRGVIQHGDWTYQTLVMLEMTSQSRDV |
| Parental | YTCSVEHASLQSPISVEWRAQSESAQSKLLSGIGGFVLGLIFLSVGLIIHLKNKK |
| YTCSVEHASLQSPISVEWRAQSESAQSKLLSGIGGFVLGLIFLSVGLIIHLKNKK | |
| Retrocopy | YTCSVEHASLQSPISVEWRAQSESAQSKLLSGIGGFVLGLIFLSVGLIIHLKNKK |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_1103 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_1103 was not experimentally validated.
Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Macropus eugenii | ENSMEUG00000004650 | 1 retrocopy |
retro_meug_1103 ,
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