>retro_meug_1127
ACTATTATCTGCAATGTGAAAAAAATGTCCAGATTTCTCTACCTCTGGCCAGGAGGAGGTAGCCACTGAACATGAAGGGA
AGCAAGAGTCAGCCATATTTGATGCTGTCATGGTCTGCACTGGTTTTGTCACTGACCCGTTTTTGCCACTAGATACTTTG
CCAGGTATCAACACTTTTAAAGGTAAGTACTTGCACAGCAGGGAGTACAAGCATTCAGGTCTGTTCAAGGATAAGAGAGT
TCTTGTGATTGGCATGGGGATTTCTGGCGCAGATATTGCTGTGGAGGCCCAGTCACATGGCTAAAAAGATGTTGCTCAGC
ACCACTGGAGGTGCATGGCTGATAAATCGATTTCTTGACCATGGGTATCCTTGGGATATGGTGTTCACTTCTCGATTTCA
AAGCACATTAAGAAATTCCCTCCAGACTTCTGTTGTAAACTGGCTATTTGGCAAAACAGCAAATAGCAGGTTTGATCATG
CAAACTATAGTTTGATTCCAGAAAACAGGACTTCTGTAAGAGAACCTATAGTGAATGGTGAGCTCCCAGGACGCATAATT
ACTGGGAAGGTGTTGATCAAACCCAGTGTGGAGAAAGTAAAAGAAAGCTCTGTGATGTTTAAGAATACTTCAGAAGAAGA
GCCTATTGATATCATTGTCTTGGCCACAGGATATACTTTTGCTTTCCCTTTCCTTGATGAGTCTATAGTGAAAGTTGAAA
ATAATCAGGCCTGTTTGTATAAGTAAATATTCCCTGCACATTTAGAAAAACCAACTCTGGCTGTCATTAGCCTCATGAAG
CCTTCAGGATCTTTGGTTTGCACAGCAGAAGTACAAGCCCGATGGGTCACACAAGTCCTAAAGGGCTTGAATAAACTACC
ACCACCAGATGCCATGAGAGAAGACATTAACACAAAGAAAGCAAATAAAGCTACTGGG
ORF - retro_meug_1127 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
81.85 % |
Parental protein coverage: |
58.76 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | TIVCNVKK-CPDFSTSGQWEVTTEHEGKQESAIFDAVMVGTGYLTNPFLPLDTLPGINTFKGKYFHSREY |
| TI.CNVKK.CPDFSTSGQ.EV.TEHEGKQESAIFDAVMV.TG..T.PFLPLDTLPGINTFKGKY.HSREY |
Retrocopy | TIICNVKK>CPDFSTSGQEEVATEHEGKQESAIFDAVMVCTGFVTDPFLPLDTLPGINTFKGKYLHSREY |
|
Parental | KHLDIFKDKRVLVIGMGNSGTDIAVEA-SHVAKKVFLSTTGGAWLISRVFDHGYPWDMVFTTRFQSALRS |
| KH...FKDKRVLVIGMG.SG.DIAVEA.SH.AKK..LSTTGGAWLI.R..DHGYPWDMVFT.RFQS.LR. |
Retrocopy | KHSGLFKDKRVLVIGMGISGADIAVEA>SHMAKKMLLSTTGGAWLINRFLDHGYPWDMVFTSRFQSTLRN |
|
Parental | YLPTSVVNWLFGQKANSWFDHANYGLVPEKRNFLREPILNDELPGQIISGKVLIKPKVEKVKENSVVFKN |
| .L.TSVVNWLFG..ANS.FDHANY.L.PE.R...REPI.N.ELPG.II.GKVLIKP.VEKVKE.SV.FKN |
Retrocopy | SLQTSVVNWLFGKTANSRFDHANYSLIPENRTSVREPIVNGELPGRIITGKVLIKPSVEKVKESSVMFKN |
|
Parental | TPEEEPIDIIVLATGYTFAFPFLDESVVKVENNQASLYKYIFPAHLEKPTLAVIGLIKPLGALTCTTEVQ |
| T.EEEPIDIIVLATGYTFAFPFLDES.VKVENNQA.LYK.IFPAHLEKPTLAVI.L.KP.G.L.CT.EVQ |
Retrocopy | TSEEEPIDIIVLATGYTFAFPFLDESIVKVENNQACLYK*IFPAHLEKPTLAVISLMKPSGSLVCTAEVQ |
|
Parental | ARWVTRVLKGLNKLPPPEVMREDINTRKANKPTG |
| ARWVT.VLKGLNKLPPP..MREDINT.KANK.TG |
Retrocopy | ARWVTQVLKGLNKLPPPDAMREDINTKKANKATG |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_1127 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_1127 was not experimentally validated.
Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
3 retrocopies.