RetrogeneDB ID: | retro_meug_1144 | ||
Retrocopy location | Organism: | Wallaby (Macropus eugenii) | |
| Coordinates: | Scaffold30404:3466..3878(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | SPC24 | ||
| Ensembl ID: | ENSMEUG00000016219 | ||
| Aliases: | None | ||
| Description: | SPC24, NDC80 kinetochore complex component [Source:HGNC Symbol;Acc:26913] |
Retrocopy-Parental alignment summary:
>retro_meug_1144
GAAGATGTGGTCCAGAAATTAATTGATGAGAAAGAAATAGCACAACGTGTTGAAATCAAGTTACAGAAATTTGAATCTGA
GCTTCAGAAGACCAGCTAGAACGATGCAAGTCTAAAGACTGATCTCTATCTGTTGATGAAAGAGCTGAAAGAACTCAAAA
AAAATGGAGCAAGACCTCACAAGGACAGAAGGAGAAGTGGATGAAGATTCAACAGTTGCAATCCCTTCAGCTGTATATGT
GTCTCAACTTTATCTAGTCAGTAAAATTGAGTGGGATTGTGAATGTGGACCAATTGTGATTAAAGACATTCATCATGGTC
CCAATGTTGCCCAGCCTATTCATTTTGACAATACCCAGCACTCTAGGAAGTTTATCAGTGACGATCTCTGGAACATGGTG
GACATCAAATGG
ORF - retro_meug_1144 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 73.38 % |
| Parental protein coverage: | 97.18 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | EEVAQKLIDEKETAQRVETKLQKLESELQKTNEKDASLKADLQYLMKQLEELKEM-EQDLTRREREVDED |
| E.V.QKLIDEKE.AQRVE.KLQK.ESELQKT...DASLK.DL..LMK.L.EL....EQDLTR.E.EVDED | |
| Retrocopy | EDVVQKLIDEKEIAQRVEIKLQKFESELQKTS*NDASLKTDLYLLMKELKELXXX>EQDLTRTEGEVDED |
| Parental | TTVVIPSAVYVSQLYHRVSKIEWSYECEPTMIKGIHHGPSIAQPIHFDITQHSKKFISDYLWNLVDTQW |
| .TV.IPSAVYVSQLY..VSKIEW..EC.P..IK.IHHGP..AQPIHFD.TQHS.KFISD.LWN.VD..W | |
| Retrocopy | STVAIPSAVYVSQLY-LVSKIEWDCECGPIVIKDIHHGPNVAQPIHFDNTQHSRKFISDDLWNMVDIKW |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_1144 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_1144 was not experimentally validated.
Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Macropus eugenii | ENSMEUG00000016219 | 1 retrocopy |
retro_meug_1144 ,
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