RetrogeneDB ID: retro_meug_1222

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold331780:132..1484(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: KLC2
• Ensembl ID: ENSMEUG00000000022
• Aliases: None
• Description: kinesin light chain 2 [Source:HGNC Symbol;Acc:20716]

Sequence

>retro_meug_1222
GAGGACCCTTCTCCCAACGAGGAGAACCCAACTGAGGGCTCTAGGGGAGAAGATACGGGTGCCCAGCACCGAGGCTATGC
GATTCCGGCCCGGCTTTGGACCTTGCACAATCTGGTGATTCAGTACGCCTCCCAGGGCTTGCTACGAGGTCGCTTGTCCC
CCTCTGTAAACAGGACCTGGAGAAGACCTCAGGGTATGACCACTCCGACGTGGCCACCATGCTGAACATCTTGGCTCTTG
TACACCGGGATTAGAACGTATACAAAGAAACCGTCTACCTGCTCAGTGATGCTCTAGACATACGAGAGAAGACTTTGGGA
GACGATCATCCCGCTGTGGCAACTATCTTGTACAACCTGGCGGTTCTGTGCGGCAGAAGGGGCAAGTACAGAGAAACAGA
ACCCTTGTGCAAACGAGCCCTGGAGATCCAAGAGAAGGTGCTGGGCAAGTTCCACCCAGATGTGGCCAAACATCTGAATA
ACCTGGCCCTGCTCTGTCAGAACTAGGGCAAGGCCGAGGAAGTAGAGTACTAATACCGGTGTGCTCTGGAGATCGAGGAG
GCTCGGGTTGGGTCCTGACGACCCCAACGTGGCCAAGAGGAAGAATAACTTGGCCTCTTGCTATCTGAAGCAGGGGAAAT
ACGAAGACACAGAAACCCTGTATAAGGAGATCCTGACTCATGTTCATGAGATGGAGTCTGGCTCAGTCAATGGAGATAAT
AAGCCCTTCTGGATGCACCCTGAAAATCTGGAGGAGAGCAAGGAGAATCCACGAGATACTCCTATGGAGAATATGGCAGA
ATATGGTACAAGACATGTAAAGTGGACAGCCCCACGGTGAACACCACACTTCGGAGCCTCGGGGTTCTCTACCGCCTGCA
GAAGAAGATGGAGGCTGCTCGTACCCTGGAAGACTGTGCCAGTCGCACTCGGAAGTAGGGCCTGGACGCCATGAGCCAGA
CCAAGGTGGTGGAGCTGTTGAAAGATGGCGGCGGGCCAGGGGACCACGCACTGGCCAAGAGAACGCTGGCGGCACAGGGT
CTCGGGCTGACCCGGAGCCCGAGGATCTGGGGCCCACGGTTGAGTGGTCTGGGGATGGCAGCGGTTCTCTGGAGAAGCGG
CTCTTTGGGGAAGCTCCGAGATGCCCTACAGCGCAGCGATGAGACGCTGGTGAAGAAGCTGCAGGGGGGCGGCCCCCCAG
AGCCTCTCAGTCCCCCGATGAAGCGAGCCAGCTCCCGCAACTTCCTCCACAGGAGTGCAGAACAGGCCAGCCAGTCCCAT
GCCAACCTGTCTGACAGTCTCAGGCTCAGCTCCAGCTCTCTTGACTTCTCTCACTGGAGCTCTCTCATTGGC

Alignment

ORF - retro_meug_1222 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 77.01 %
• Parental protein coverage: 72.86 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 6

Retrocopy - Parental Gene Alignment:

Parental  DDLFPNED---EQNPAGDASTQHGGYEIPARLRTLHNLVIQYASQGR-YEVA-VPLCKQALEDLEKTSGH
          .D..PNE....E.....D...QH.GY.IPARL.TLHNLVIQYASQG..YEVA.VPLCKQ...DLEKTSG.
Retrocopy EDPSPNEENPTEGSRGEDTGAQHRGYAIPARLWTLHNLVIQYASQGL>YEVA>VPLCKQ---DLEKTSGY

Parental  DHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYREAEPL
          DH.DVATMLNILALV.RD.N.YKE...LL.DAL.IREKTLG.DHPAVA..L.NLAVL.G.RGKYRE.EPL
Retrocopy DHSDVATMLNILALVHRD*NVYKETVYLLSDALDIREKTLGDDHPAVATILYNLAVLCGRRGKYRETEPL

Parental  CKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYEAR-LGPDDPNVAKTKNNLA
          CKRALEI.EKVLGKFHPDVAK.LNNLALLCQN.GKAEEVEY.YR.ALEI.EAR.LGPDDPNVAK.KNNLA
Retrocopy CKRALEIQEKVLGKFHPDVAKHLNNLALLCQN*GKAEEVEY*YRCALEIEEAR>LGPDDPNVAKRKNNLA

Parental  SCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKEKHQDATP-YGEYGS-WYKAC
          SCYLKQGKY.D.ETLYKEILT..HE.E.GSVNGDNKP.WMH.E..EESKE...D.TP.YGEYG..WYK.C
Retrocopy SCYLKQGKYEDTETLYKEILTHVHEMESGSVNGDNKPFWMHPENLEESKENPRD-TP<YGEYGRIWYKTC

Parental  KVDSPTVNTTLRSLGALYRRQGKMEAAHTLEDCATRSRKQGLDAMSQTKVVELLKDGGGRGDR-RSSREV
          KVDSPTVNTTLRSLG.LYR.Q.KMEAA.TLEDCA.R.RK.GLDAMSQTKVVELLKDGGG.GD..R...E.
Retrocopy KVDSPTVNTTLRSLGVLYRLQKKMEAARTLEDCASRTRK*GLDAMSQTKVVELLKDGGGPGDH<RTGQEN

Parental  IGGTGSRAEPEPEDLGPTVEWSGDGNGSLRRSGSFG-KLRDALRRSSEMLVKKLQGGGPQEPPNPRMKRA
          .GGTGSRA.PEPEDLGPTVEWSGDG.GSL.....FG.KLRDAL.RS.E.LVKKLQGGGP.EP..P.MKRA
Retrocopy AGGTGSRADPEPEDLGPTVEWSGDGSGSLEKR-LFG>KLRDALQRSDETLVKKLQGGGPPEPLSPPMKRA

Parental  SSLNFLHRSAEQTSQSDANLSDSRVLSSSSLDLSRRSSLVG
          SS.NFLHRSAEQ.SQS.ANLSDS..LSSSSLD.S..SSL.G
Retrocopy SSRNFLHRSAEQASQSHANLSDSLRLSSSSLDFSHWSSLIG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1222 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1222 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000000022	1 retrocopy	retro_meug_1222 ,