RetrogeneDB ID: retro_meug_1246

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold339228:8..263(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: N4BP2L1
• Ensembl ID: ENSMEUG00000016698
• Aliases: None
• Description: NEDD4 binding protein 2-like 1 [Source:HGNC Symbol;Acc:25037]

Sequence

>retro_meug_1246
CTACTTATTTTAAGAGGTCTGCCTGGTTCAGGGAAAACAACATTGTCTCATGTTCTGCTTGGTCAGAATCGTGGGGGCAT
CGTCTTCAGCACTGATGATTATTTTCGGCATCAAAATGGATATACATGTAACCTTAGACAACTTGGTGATGCCCATGACT
GGAACCAGAGCAGAGTAAAGAAAGCTATTGATCAGGGAAGATCTCTGGTTATAATAGATAACACTAATACCCAAGCTTGG
GAAATGAAACTTTAT

Alignment

ORF - retro_meug_1246 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 53.49 %
• Parental protein coverage: 55.48 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  LYLLRGLPGSGKSTLARKLKHDFPRALIFSTDDFFFKEDGTYEFNPDVLEEAHDWNQKRARKAMRSGISP
          L..LRGLPGSGK.TL...L.........FSTDD.F....G.Y..N...L..AHDWNQ.R..KA...G.S.
Retrocopy LLILRGLPGSGKTTLSHVLLGQNRGGIVFSTDDYFRHQNG-YTCNLRQLGDAHDWNQSRVKKAIDQGRSL

Parental  IIIDNTNLHAWEMKPY
          .IIDNTN..AWEMK.Y
Retrocopy VIIDNTNTQAWEMKLY

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1246 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1246 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000000993	1 retrocopy	retro_btau_1697,
Macropus eugenii	ENSMEUG00000016698	1 retrocopy	retro_meug_1246 ,