RetrogeneDB - Retrocopy retro_meug

                        
>retro_meug_1292
GAGTACTGGCACCAGGTGGAGCTTGCTCTCCTGCAGCTCAAGGGACTGGAGGACAGCTATCAAGGATGCATAGCTTTCCC

ATATAAAAATTTCATTGTCACTCCCATTGCCTTCCTCTTGTTCCAACTGTCGGGAGATTTGGAGGACCTGGAGCTGACCC

TGAACAAGACCGAGGAGAGGCGCATCATTAGCTCGGGATCCTGCTCAGCCCCATCAAGCTACTGCCCAACAACAGTGAGC

TCCTGGTATCCTATGAGACTTGGAATTCCTACAAGCATATGCTTTGTATCATCAAGAAATATGACTTCCGTTTCCGGACT

CTGCCCAAAGGTGGGTAAACACTGATCCCTGAGAACAAGAAGCTTTTCTCCTCCAATCCTGGGACCAACTTCTCCTGTGA

TGAAGTCTATATCTTGGGCAGTGGGTTGGTGATCATAGAGACAACCATTGGTAACAGCAACGCGGAGCTGCAGAAGTAAG

TTAAGCCTCAGAACCGCGTTCCCTAGTGGCTAAATAATATTGTGTCTAAACGACCACCCCAGGATGGCTCCACGTGGACT

GCCATCTTTAAGAAATTCAACAGCAGCACGTGCATGATCGTAAATAACAATAGTTTAGATTCGGGAAACTTCAAGCCCAT

GAATGGCTTGCTCACTATTCTTGAGCAGATTCCGAGTCTGTTGGTGGTGTCTGACAAGACTCAGGAGTTGTATGAGAAGA

GCTATTGAGCCAGCTGCAACTTACTGTATTTTGAGTCAATGTTCAATGGCAGTGGGATGCCTGACCTGGGGAAGCAGTTT

GGAGACTGGTTCTCATACAAGAACAGCCCCCCAGCCCAGACCTTTGAACCGAATCAGCCGCTGGTGCAAGATATGGACTC

CATGATCCAGCTGATGAGATTCAACAACTTCCCCCAGGATCCCCTGTCCCTATGTGAGGACCACAACCCTATGTAGAATG

AGGAGAATGCCATCTCAGCCCACTCAAACCTCAACCCAGCTAATGGGACATACCCCTTTTTTGCTCTATCTCAGAGATCC

CTTGGAGGCATTGATATGAAGGTTACTTCTTATGAGTTCTCCAAAGACTTCCACCTGATAGCAGTGTGTGACCCCTTCCA

GTGGACCTCTTCACCC

ORF - retro_meug_1292 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

Percent Identity:	74.22 %
Parental protein coverage:	67.32 %
Number of stop codons detected:	5
Number of frameshifts detected:	1

Retrocopy - Parental Gene Alignment:

                                ParentalEYWHQVELALLQLKGLEDSYQGRIAFPSKNFTITPFGFLLFQLSGDLEDLEPALNKTEQRRVMGSGSCSA
EYWHQVELALLQLKGLEDSYQG.IAFP.KNF..TP..FLLFQLSGDLEDLE..LNKTE.RR...SGSCSA
RetrocopyEYWHQVELALLQLKGLEDSYQGCIAFPYKNFIVTPIAFLLFQLSGDLEDLELTLNKTEERRIISSGSCSA
ParentalL-IKLLPNNSELLVSHDTWNSYQHMLRIIKKYDFRFRTLPK---PLIPGNKQVFSSYPGTIFSCDDFYIL
..IKLLPNNSELLVS..TWNSY.HML.IIKKYDFRFRTLPK....LIP.NK..FSS.PGT.FSCD..YIL
RetrocopyP<IKLLPNNSELLVSYETWNSYKHMLCIIKKYDFRFRTLPKGG*TLIPENKKLFSSNPGTNFSCDEVYIL
ParentalGSGLVTLETTIGNSNAELWKYVKPQNSVLEWLRNIVANRLAQDGSTWSTIFKKFNSGTYNNQWMIVDYNA
GSGLV..ETTIGNSNAEL.K.VKPQN.V..WL.NIV..R..QDGSTW..IFKKFN........MIV..N.
RetrocopyGSGLVIIETTIGNSNAELQK*VKPQNRVP*WLNNIVSKRPPQDGSTWTAIFKKFN----SSTCMIVNNNS
ParentalFIPGKSKPMNGLLTILEQIPGLVVVADKTQELYEKGYWASYNLPYFESVFNASGMPDLVKQFGDWFSYKN
...G..KPMNGLLTILEQIP.L.VV.DKTQELYEK.Y.AS.NL.YFES.FN.SGMPDL.KQFGDWFSYKN
RetrocopyLDSGNFKPMNGLLTILEQIPSLLVVSDKTQELYEKSY*ASCNLLYFESMFNGSGMPDLGKQFGDWFSYKN
ParentalSPRARIFGRNQSLVHDMDSMIRLMRFNNFPHDPLSRCEDCNPMQNGENAISARSDLNPANGTYPFSALSQ
SP.A..F..NQ.LV.DMDSMI.LMRFNNFP.DPLS.CED.NPM.N.ENAISA.S.LNPANGTYPF.ALSQ
RetrocopySPPAQTFEPNQPLVQDMDSMIQLMRFNNFPQDPLSLCEDHNPM*NEENAISAHSNLNPANGTYPFFALSQ
ParentalRSHGGIDMKVTL--LSKDLRLIAVSGP-TWDQLP
RS.GGIDMKVT....SKD..LIAV..P..W...P
RetrocopyRSLGGIDMKVTSYEFSKDFHLIAVCDPFQWTSSP

                            

                            Legend:
                            
                                *Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide

                        

RNA-Seq - click to see more details

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Macropus eugenii was not studied using ChIP-Seq data.

EST - click to see more details

No EST(s) were mapped for retro_meug_1292 retrocopy.

TSS - click to see more details

Macropus eugenii was not studied using FANTOM5 data.

Lab - click to see more details

retro_meug_1292 was not experimentally validated.

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000016704	1 retrocopy	retro_meug_1292 ,

	RetrogeneDB ID:	retro_meug_1292
Retrocopy location	Organism:	*Wallaby (Macropus eugenii)*
	Coordinates:	Scaffold35735:6207..7343(-)
	Located in intron of:	None
Retrocopy information	Ensembl ID:	None
	Aliases:	None
	Status:	NOVEL
Parental gene information	Parental gene summary:
	Parental gene symbol:	PLBD2
	Ensembl ID:	ENSMEUG00000016704
	Aliases:	None
	Description:	phospholipase B domain containing 2 [Source:HGNC Symbol;Acc:27283]

Parental	EYWHQVELALLQLKGLEDSYQGRIAFPSKNFTITPFGFLLFQLSGDLEDLEPALNKTEQRRVMGSGSCSA
	EYWHQVELALLQLKGLEDSYQG.IAFP.KNF..TP..FLLFQLSGDLEDLE..LNKTE.RR...SGSCSA
Retrocopy	EYWHQVELALLQLKGLEDSYQGCIAFPYKNFIVTPIAFLLFQLSGDLEDLELTLNKTEERRIISSGSCSA

Parental	L-IKLLPNNSELLVSHDTWNSYQHMLRIIKKYDFRFRTLPK---PLIPGNKQVFSSYPGTIFSCDDFYIL
	..IKLLPNNSELLVS..TWNSY.HML.IIKKYDFRFRTLPK....LIP.NK..FSS.PGT.FSCD..YIL
Retrocopy	P<IKLLPNNSELLVSYETWNSYKHMLCIIKKYDFRFRTLPKGG*TLIPENKKLFSSNPGTNFSCDEVYIL

Parental	GSGLVTLETTIGNSNAELWKYVKPQNSVLEWLRNIVANRLAQDGSTWSTIFKKFNSGTYNNQWMIVDYNA
	GSGLV..ETTIGNSNAEL.K.VKPQN.V..WL.NIV..R..QDGSTW..IFKKFN........MIV..N.
Retrocopy	GSGLVIIETTIGNSNAELQKVKPQNRVPWLNNIVSKRPPQDGSTWTAIFKKFN----SSTCMIVNNNS

Parental	FIPGKSKPMNGLLTILEQIPGLVVVADKTQELYEKGYWASYNLPYFESVFNASGMPDLVKQFGDWFSYKN
	...G..KPMNGLLTILEQIP.L.VV.DKTQELYEK.Y.AS.NL.YFES.FN.SGMPDL.KQFGDWFSYKN
Retrocopy	LDSGNFKPMNGLLTILEQIPSLLVVSDKTQELYEKSY*ASCNLLYFESMFNGSGMPDLGKQFGDWFSYKN

Parental	SPRARIFGRNQSLVHDMDSMIRLMRFNNFPHDPLSRCEDCNPMQNGENAISARSDLNPANGTYPFSALSQ
	SP.A..F..NQ.LV.DMDSMI.LMRFNNFP.DPLS.CED.NPM.N.ENAISA.S.LNPANGTYPF.ALSQ
Retrocopy	SPPAQTFEPNQPLVQDMDSMIQLMRFNNFPQDPLSLCEDHNPM*NEENAISAHSNLNPANGTYPFFALSQ

Parental	RSHGGIDMKVTL--LSKDLRLIAVSGP-TWDQLP
	RS.GGIDMKVT....SKD..LIAV..P..W...P
Retrocopy	RSLGGIDMKVTSYEFSKDFHLIAVCDPFQWTSSP

*	Stop codon
>	Forward frameshift by one nucleotide
<	Reverse frameshift by one nucleotide

RetrogeneDB ID:

retro_meug_1292