RetrogeneDB ID: retro_meug_1309

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold363674:1416..1681(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: GINS1
• Ensembl ID: ENSMEUG00000016481
• Aliases: None
• Description: GINS complex subunit 1 (Psf1 homolog) [Source:HGNC Symbol;Acc:28980]

Sequence

>retro_meug_1309
GATCAATTGCTCTAGGTTCCAGTTCTCAGGTGGGAATGCAGCAGTGTCTTGCCAAACTGTCTGTAATTCTGCACATCAGC
TGAAGAAAGGGAATCGTTCAATCATTATAAAAAAGTCTCTTGCTACATATGTGAGGTGTTTGGGTAGAGATGAAGGATTA
GACAGTGTACAGCCTATGAAATCCTGTACAAGCTTATATATTGAAGTGTGGTGTCTAAAAGACTGTGGAGAATTTGAAAT
TGATGATGCCACTTCAATTTTATTG

Alignment

ORF - retro_meug_1309 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 68.54 %
• Parental protein coverage: 59.06 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  DRLLRIRALRWEYGSVLPNALRFHMSAEEIEWFNCY-KKSLATYMRCLGGDEGLDITQDMKPPKSLYIEV
          D.LL....LRWE..SVLPN.L.F..SAEE.E.FN.Y.KKSLATY.RCLG.DEGLD..Q.MK...SLYIEV
Retrocopy DQLL*VPVLRWECSSVLPNCL*FCTSAEERESFNHY>KKSLATYVRCLGRDEGLDSVQPMKSCTSLYIEV

Parental  RCLKDYGEFEVDDGTSVLL
          .CLKD.GEFE.DD.TS.LL
Retrocopy WCLKDCGEFEIDDATSILL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1309 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1309 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Echinops telfairi	ENSETEG00000002718	1 retrocopy	retro_etel_1594,
Macropus eugenii	ENSMEUG00000016481	1 retrocopy	retro_meug_1309 ,
Monodelphis domestica	ENSMODG00000006443	1 retrocopy	retro_mdom_1191,
Rattus norvegicus	ENSRNOG00000008091	1 retrocopy	retro_rnor_2888,
Sarcophilus harrisii	ENSSHAG00000017422	1 retrocopy	retro_shar_343,
Sus scrofa	ENSSSCG00000024720	1 retrocopy	retro_sscr_238,