RetrogeneDB ID: retro_meug_1375

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold384:96739..97717(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: PEPD
• Ensembl ID: ENSMEUG00000004332
• Aliases: None
• Description: peptidase D [Source:HGNC Symbol;Acc:8840]

Sequence

>retro_meug_1375
TTTAAAGTCAACAACACTATTCTTCACCCAGAAATTGTGGAGTGCCGTGTGATTAAGACTGACATGGAGTTAGAGGTTTT
GCGGTATACCAACAAAGTCTCCAGTGACGCCCATAAGGAGGTCATGAAAGCAGTAAAAGTGGGAATGAAGGAATATGAGT
TGGAAAGCCTCTTTGAACACTACTGCTATTCCCGTGGTGGGATGCACCATAGTTCCTACACATGCATCTGTGGCAGTGGA
GAGAATGCTGCCGTCTTACACTATGGACATGCTGGAGCCCCAAATGACAAGACAATTCAAGATGGAGACCTGTGCTTGTT
TGACATGGGAGGTGAATATTACTGTTTCTCATCTGATATCACCTGCACCTTCCCTGCTAATGGGAAATTCACTCCTGACC
AAAAGGCCATCTATGAAGCTGTACTGAGATCTTCCCGGGCTGTCATGAATGCCATCAAACCAGGAGTATCCTGGCCTGAC
ATGCACCGTCTGGCTGACCGAGTCCACCTGGAGGAGCTCACTCGCATCGGTATCCTGACTGGCAATGTGGAAGACATGGC
TAAGGTCCACCTGGGTGCTGTATTCATGCCTCATGGACTCGGGCACTTCCTTGGAATTGATGTGCATGATGTTGGTGGCT
ACCCTGAGGGTGTGGAGCGTATCGATGAGCCAGGCCTGAGGAGCCTGCGGACAGCCCGCAGTCTGGAGCAGGGGATGGTG
CTGACTGTGGAGCCAGGCATTTACTTCATTGACCACCTCCTAGACCAGGCCTTGGCTGACCCTGCACAGGCCTGCTTCAT
CAATAACCACATCCTGCAGCGTTTCCGAGGCTTTGGCGGGGTTCGCATTGAGGAGGATGTGGTGGTGACTGCCAGTGGTA
TGGAGCTGTTGACTTGTGTGCCTCGAACCGTGGAGGAAATAGAAGCGTATATGGCAGACTCCAACAAGGCCTTCGCCCCT
TTTCCTACCCAAAAGGAG

Alignment

ORF - retro_meug_1375 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 94.79 %
• Parental protein coverage: 66.8 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  FKVNNTILHPEIVECRVIKTDMELEVLRYTNKVSSDAHKEXXXXXXXXXXXXXXXXLFEHYCYSRGGMRH
          FKVNNTILHPEIVECRVIKTDMELEVLRYTNKVSSDAHKE................LFEHYCYSRGGM.H
Retrocopy FKVNNTILHPEIVECRVIKTDMELEVLRYTNKVSSDAHKEVMKAVKVGMKEYELESLFEHYCYSRGGMHH

Parental  SSYTCICGSGENAAVLHYGHAGAPNDKTIQDGDLCLFDMGGEYYCFSSDITCTFPANGKFTPDQKAIYEA
          SSYTCICGSGENAAVLHYGHAGAPNDKTIQDGDLCLFDMGGEYYCFSSDITCTFPANGKFTPDQKAIYEA
Retrocopy SSYTCICGSGENAAVLHYGHAGAPNDKTIQDGDLCLFDMGGEYYCFSSDITCTFPANGKFTPDQKAIYEA

Parental  VLRSSRAVMNAIKPGVSWPDMHRLADRVHLEELTRIGILTGNVEDMAKVHLGAVFMPHGLGHFLGIDVHD
          VLRSSRAVMNAIKPGVSWPDMHRLADRVHLEELTRIGILTGNVEDMAKVHLGAVFMPHGLGHFLGIDVHD
Retrocopy VLRSSRAVMNAIKPGVSWPDMHRLADRVHLEELTRIGILTGNVEDMAKVHLGAVFMPHGLGHFLGIDVHD

Parental  VGGYPEGVERIDEPGLRSLRTARSLEQGMVLTVEPGIYFIDHLLDQALADPAQACFINNHILQRFRGFGG
          VGGYPEGVERIDEPGLRSLRTARSLEQGMVLTVEPGIYFIDHLLDQALADPAQACFINNHILQRFRGFGG
Retrocopy VGGYPEGVERIDEPGLRSLRTARSLEQGMVLTVEPGIYFIDHLLDQALADPAQACFINNHILQRFRGFGG

Parental  VRIEEDVVVTASGMELLTCVPRTVEEIEAYMADSNKAFAPFPTQKE
          VRIEEDVVVTASGMELLTCVPRTVEEIEAYMADSNKAFAPFPTQKE
Retrocopy VRIEEDVVVTASGMELLTCVPRTVEEIEAYMADSNKAFAPFPTQKE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1375 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1375 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000004332	1 retrocopy	retro_meug_1375 ,